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CLINICAL MEASUREMENT - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:tibia midshaft morphological measurement
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Accession:CMO:0002731 term browser browse the term
Definition:Any measurement of the physical form or structure of the section of the tibia located midway between the two epiphyses (that is, the ends) of the bone.


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tibia midshaft cross-sectional area term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss54 Bone structure and strength QTL 54 IDA 1.0E-4 3.5 RGD PMID:19113924 RGD:2312767
Q Bss55 Bone structure and strength QTL 55 IDA 1.0E-4 3.2 RGD PMID:19113924 RGD:2312767
Q Bss61 Bone structure and strength QTL 61 IDA 1.0E-4 0.9 RGD PMID:19113924 RGD:2312767 NCBI chr10:5,893,811...50,893,811 JBrowse link
Q Bss62 Bone structure and strength QTL 62 IDA 1.0E-4 1.5 RGD PMID:19113924 RGD:2312767 NCBI chr10:5,893,811...50,893,811 JBrowse link
Q Bss72 Bone structure and strength QTL 72 IDA 1.0E-4 2.6 RGD PMID:19113924 RGD:2312767 NCBI chr 3:47,904,172...70,710,963 JBrowse link
Q Bss73 Bone structure and strength QTL 73 IDA 1.5 RGD PMID:19113924 RGD:2312767 NCBI chr 3:47,904,172...70,710,963 JBrowse link
Q Bss76 Bone structure and strength QTL 76 IDA 1.0E-4 3.0 RGD PMID:19113924 RGD:2312767 NCBI chr 8:39,106,258...91,341,052 JBrowse link
Q Bss79 Bone structure and strength QTL 79 IDA 1.0E-4 1.8 RGD PMID:19113924 RGD:2312767 NCBI chr10:62,556,066...107,556,066 JBrowse link
Q Bss82 Bone structure and strength QTL 82 IDA 1.0E-4 3.0 RGD PMID:19113924 RGD:2312767 NCBI chr14:38,023,710...83,023,710 JBrowse link
tibia midshaft endosteal cross-sectional area term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss56 Bone structure and strength QTL 56 IDA 1.0E-4 2.4 RGD PMID:19113924 RGD:2312767
Q Bss77 Bone structure and strength QTL 77 IDA 1.0E-4 3.1 RGD PMID:19113924 RGD:2312767 NCBI chr 8:39,106,258...91,341,052 JBrowse link
Q Bss80 Bone structure and strength QTL 80 IDA 1.0E-4 2.0 RGD PMID:19113924 RGD:2312767 NCBI chr10:62,556,066...107,556,066 JBrowse link
Q Bss83 Bone structure and strength QTL 83 IDA 1.0E-4 2.9 RGD PMID:19113924 RGD:2312767 NCBI chr14:38,023,710...83,023,710 JBrowse link
tibia midshaft total cross-sectional area term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss59 Bone structure and strength QTL 59 IDA 1.0E-4 2.9 RGD PMID:19113924 RGD:2312767 NCBI chr 5:8,627,230...53,627,230 JBrowse link
Q Bss65 Bone structure and strength QTL 65 IDA 1.0E-4 3.9 RGD PMID:19113924 RGD:2312767 NCBI chr15:67,399,137...108,192,169 JBrowse link
Q Bss71 Bone structure and strength QTL 71 IDA 1.0E-4 2.6 RGD PMID:19113924 RGD:2312767
Q Bss85 Bone structure and strength QTL 85 IDA 1.0E-4 0.8 RGD PMID:19113924 RGD:2312767 NCBI chr18:15,226,101...42,690,662 JBrowse link
Q Bss86 Bone structure and strength QTL 86 IDA 4.1 RGD PMID:20699128 RGD:4889918 NCBI chr 1:46,302,615...91,302,615 JBrowse link
Q Bss91 Bone structure and strength QTL 91 IDA 4.0 RGD PMID:20699128 RGD:4889918 NCBI chr10:83,061,236...92,869,129 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  clinical measurement 2369
    body morphological measurement 733
      skeleton morphological measurement 201
        bone morphological measurement 179
          tibia morphological measurement 39
            tibia midshaft morphological measurement 19
              tibia midshaft cortical thickness 0
              tibia midshaft cross-sectional area + 19
              tibia midshaft width 0
Path 2
Term Annotations click to browse term
  clinical measurement 2369
    musculoskeletal system measurement 297
      skeletal system measurement 235
        skeleton morphological measurement 201
          bone morphological measurement 179
            tibia morphological measurement 39
              tibia midshaft morphological measurement 19
                tibia midshaft cortical thickness 0
                tibia midshaft cross-sectional area + 19
                tibia midshaft width 0
paths to the root