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CLINICAL MEASUREMENT - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:serum cholesterol level
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Accession:CMO:0002281 term browser browse the term
Definition:The amount of cholesterol, a eukaryotic sterol that in higher animals is the precursor of bile acids and steroid hormones and a key constituent of cell membranes, in a specified sample of serum, the clear liquid that separates from blood after it has clotted completely, i.e. blood plasma from which fibrinogen has been removed. Cholesterol in the serum is associated with various lipoproteins.



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serum high density lipoprotein cholesterol level term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Scl12 Serum cholesterol level QTL 12 IDA RGD PMID:8698878 RGD:61079 NCBI chr19:13,926,401...30,303,727 JBrowse link
Q Scl27 Serum cholesterol level QTL 27 IDA RGD PMID:11721057 RGD:70849 NCBI chr18:52,292,875...59,796,643 JBrowse link
Q Scl28 Serum cholesterol level QTL 28 IDA RGD PMID:11721057 RGD:70849 NCBI chr18:11,944,299...24,797,117 JBrowse link
Q Scl61 Serum cholesterol level QTL 61 IDA RGD PMID:10720472 RGD:619689 NCBI chr17:27,389,946...53,481,766 JBrowse link
serum total cholesterol level term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Scl1 Serum cholesterol level QTL 1 IDA RGD PMID:10634822 RGD:61092 NCBI chr15:16,725,528...80,672,115 JBrowse link
Q Scl2 Serum cholesterol level QTL 2 IDA RGD PMID:10634822 RGD:61092 NCBI chr 5:59,793,399...143,070,159 JBrowse link
Q Scl22 Serum cholesterol level QTL 22 IDA RGD PMID:9199194 RGD:61055 NCBI chr18:11,941,791...31,393,320 JBrowse link
Q Scl25 Serum cholesterol level QTL 25 IDA RGD PMID:11721057 RGD:70849 NCBI chr 1:94,494,440...117,601,394 JBrowse link
Q Scl26 Serum cholesterol level QTL 26 IDA RGD PMID:11721057 RGD:70849 NCBI chr 5:43,726,656...86,724,018 JBrowse link
Q Scl29 Serum cholesterol level QTL 29 IDA RGD PMID:14724732 RGD:737686 NCBI chr 6:35,098,709...71,636,405 JBrowse link
Q Scl3 Serum cholesterol level QTL 3 IDA RGD PMID:10634822 RGD:61092 NCBI chr 7:44,867,533...89,867,533 JBrowse link
Q Scl4 Serum cholesterol level QTL 4 IDA RGD PMID:9633608 RGD:619667 NCBI chr 4:95,174,120...140,174,120 JBrowse link
Q Scl44 Serum cholesterol level QTL 44 IDA RGD PMID:16061941 RGD:1547851 NCBI chr 5:40,128,307...148,607,290 JBrowse link
Q Scl45 Serum cholesterol level QTL 45 IDA RGD PMID:16061941 RGD:1547851 NCBI chr14:50,023,211...95,023,211 JBrowse link
Q Scl46 Serum cholesterol level QTL 46 IDA RGD PMID:16061941 RGD:1547851 NCBI chr 4:132,396,220...177,396,220 JBrowse link
Q Scl47 Serum cholesterol level QTL 47 IDA RGD PMID:16061941 RGD:1547851 NCBI chr10:50,574,707...95,574,707 JBrowse link
Q Scl48 Serum cholesterol level QTL 48 IDA RGD PMID:16061941 RGD:1547851 NCBI chr12:9,603,277...46,669,029 JBrowse link
Q Scl5 Serum cholesterol level QTL 5 IDA RGD PMID:9633608 RGD:619667 NCBI chr 1:236,125,214...260,522,016 JBrowse link
Q Scl59 Serum cholesterol level QTL 59 IDA RGD PMID:18753676 RGD:2300117 NCBI chr14:55,147,478...100,147,478 JBrowse link
Q Scl6 Serum cholesterol level QTL 6 IDA RGD PMID:12482837 RGD:629577 NCBI chr 1:72,197,680...90,508,767 JBrowse link
Q Scl60 Serum cholesterol level QTL 60 IDA RGD PMID:10720472 RGD:619689 NCBI chr 5:143,608,201...161,165,651 JBrowse link
Q Scl62 Serum cholesterol level QTL 62 IDA RGD PMID:19584880 RGD:2312642 NCBI chr 3:1...38,710,544 JBrowse link
Q Scl63 Serum cholesterol level QTL 63 IDA RGD PMID:19584880 RGD:2312642 NCBI chr 3:98,535,255...168,026,850 JBrowse link
Q Scl64 Serum cholesterol level QTL 64 IDA RGD PMID:19584880 RGD:2312642 NCBI chr 5:68,984,307...104,251,008 JBrowse link
Q Scl65 Serum cholesterol level QTL 65 IDA RGD PMID:19584880 RGD:2312642 NCBI chr10:57,134,272...102,134,272 JBrowse link
Q Scl7 Serum cholesterol level QTL 7 IDA RGD PMID:12482837 RGD:629577 NCBI chr 7:37,960,569...82,960,569 JBrowse link
Q Scl8 Serum cholesterol level QTL8 IDA RGD PMID:12482837 RGD:629577
Q Scl9 Serum cholesterol level QTL 9 IDA RGD PMID:12482837 RGD:629577 NCBI chr16:15,726,433...21,034,895 JBrowse link

Term paths to the root
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Term Annotations click to browse term
  clinical measurement 2369
    blood measurement 439
      blood chemistry measurement 426
        blood lipid measurement 109
          serum lipid level 31
            serum sterol level 28
              serum cholesterol level 28
                serum chylomicron cholesterol level 0
                serum high density lipoprotein cholesterol level + 4
                serum intermediate density lipoprotein cholesterol level 0
                serum low density lipoprotein cholesterol level + 0
                serum non-high density lipoprotein cholesterol level 0
                serum total cholesterol level + 24
                serum very low density lipoprotein cholesterol level 0
paths to the root