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CLINICAL MEASUREMENT - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:spinal cord mRNA composition measurement
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Accession:CMO:0002124 term browser browse the term
Definition:Any quantitation of the messenger RNAs which contribute to the chemical make-up of the spinal cord. Messenger RNAs are the high molecular weight, linear polymers, composed of nucleotides containing ribose and linked by phosphodiester bonds, that transfer the coding information for protein synthesis from the chromosomes to the ribosomes.


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spinal cord beta-2 microglobulin mRNA level term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Neuinf10 Neuroinflammation QTL 10 IDA RGD PMID:19525015 RGD:2311085 NCBI chr11:31,239,134...78,851,519 JBrowse link
Q Neuinf12 Neuroinflammation QTL 12 IDA RGD PMID:19525015 RGD:2311085 NCBI chr15:1...55,302,115 JBrowse link
Q Neuinf8 Neuroinflammation QTL 8 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 1:57,336,763...151,090,257 JBrowse link
spinal cord complement component 1, q subcomponent, B chain mRNA level term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Neuinf11 Neuroinflammation QTL 11 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 3:15,005,422...76,927,699 JBrowse link
Q Neuinf9 Neuroinflammation QTL 9 IDA RGD PMID:19525015 RGD:2311085 NCBI chr10:5,801,990...62,146,030 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  clinical measurement 2369
    tissue composition measurement 26
      tissue molecular composition measurement 26
        spinal cord molecular composition measurement 11
          spinal cord mRNA composition measurement 5
            spinal cord Cd74 mRNA level 0
            spinal cord RT1-B mRNA level 0
            spinal cord beta-2 microglobulin mRNA level 3
            spinal cord complement component 1, q subcomponent, B chain mRNA level 2
Path 2
Term Annotations click to browse term
  clinical measurement 2369
    nervous system measurement 63
      central nervous system measurement 29
        spinal cord measurement 11
          spinal cord morphological measurement 11
            spinal cord molecular composition measurement 11
              spinal cord mRNA composition measurement 5
                spinal cord Cd74 mRNA level 0
                spinal cord RT1-B mRNA level 0
                spinal cord beta-2 microglobulin mRNA level 3
                spinal cord complement component 1, q subcomponent, B chain mRNA level 2
paths to the root