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CLINICAL MEASUREMENT - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:plasma sterol level
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Accession:CMO:0002050 term browser browse the term
Definition:The amount of sterol, any of a group of steroids with a long (8 to 10 carbons) aliphatic side-chain at position 17 and at least one alcoholic group, in a specified sample of plasma, the fibrinogen-containing fluid portion of the blood in which the particulate components are suspended.


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calculated plasma low density lipoprotein cholesterol level term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Scl18 Serum cholesterol level QTL 18 IDA 3.7 RGD PMID:14739155 RGD:737694 NCBI chr 5:84,630,798...129,630,798 JBrowse link
plasma total cholesterol level term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Scl14 Serum cholesterol level QTL 14 IDA 4.0E-4 5.8 RGD PMID:14739155 RGD:737694 NCBI chr 5:114,131,300...159,131,300 JBrowse link
Q Scl15 Serum cholesterol level QTL 15 IDA 0.001 4.8 RGD PMID:14739155 RGD:737694 NCBI chr 5:38,011,670...83,011,670 JBrowse link
Q Scl16 Serum cholesterol level QTL 16 IDA 3.8 RGD PMID:14739155 RGD:737694 NCBI chr 8:39,752,803...84,752,803 JBrowse link
Q Scl17 Serum cholesterol level QTL 17 IDA 3.4 RGD PMID:14739155 RGD:737694 NCBI chr 2:214,404,877...251,712,708 JBrowse link
Q Scl19 Serum cholesterol QTL 19 IDA 0.001 4.6 RGD PMID:14709677 RGD:1299960 NCBI chr 1:66,400,974...132,889,942 JBrowse link
Q Scl20 Serum cholesterol level QTL 20 IDA 1.0E-4 6.4 RGD PMID:14709677 RGD:1299960 NCBI chr 5:110,770,739...155,770,739 JBrowse link
Q Scl21 Serum cholesterol level QTL 21 IDA 0.0011 3.8 RGD PMID:14709677 RGD:1299960 NCBI chr12:12,233,000...30,490,641 JBrowse link
Q Scl33 Serum cholesterol QTL 33 IDA 0.0125 2.0 RGD PMID:14709677 RGD:1299960
Q Scl34 Serum cholesterol QTL 34 IDA 0.0033 2.5 RGD PMID:14709677 RGD:1299960 NCBI chr 1:173,363,824...227,535,316 JBrowse link
Q Scl35 Serum cholesterol QTL 35 IDA 0.0073 2.6 RGD PMID:14709677 RGD:1299960 NCBI chr 5:33,311,673...78,311,673 JBrowse link
Q Scl36 Serum cholesterol QTL 36 IDA 0.0125 2.0 RGD PMID:14709677 RGD:1299960 NCBI chr 1:58,769,992...103,769,992 JBrowse link
Q Scl54 Serum cholesterol level QTL 54 IDA 2.93 RGD PMID:17620956 RGD:2290428 NCBI chr 5:36,460,764...136,631,402 JBrowse link
Q Scl55 Serum cholesterol level QTL 55 IDA 2.83 RGD PMID:17620956 RGD:2290428 NCBI chr 2:28,652,666...139,067,443 JBrowse link
Q Scl56 Serum cholesterol level QTL 56 IDA 2.26 RGD PMID:17620956 RGD:2290428 NCBI chr 3:36,101,403...81,101,403 JBrowse link
Q Scl57 Serum cholesterol level QTL 57 IDA 4.15 RGD PMID:17620956 RGD:2290428 NCBI chr 9:44,458,256...121,768,150 JBrowse link
Q Scl58 Serum cholesterol level QTL 58 IDA 3.48 RGD PMID:17620956 RGD:2290428 NCBI chr11:26,318,031...55,806,125 JBrowse link
Q Scl66 Serum cholesterol level QTL 66 IDA 4.1 RGD PMID:19584172 RGD:2316856 NCBI chr 8:39,106,363...114,525,825 JBrowse link
Q Scl67 Serum cholesterol level QTL 67 IDA 1.16E-5 4.27 RGD PMID:11071303 RGD:619669
Term paths to the root
Path 1
Term Annotations click to browse term
  clinical measurement 2369
    blood measurement 443
      blood chemistry measurement 426
        blood lipid measurement 109
          plasma lipid level 19
            plasma sterol level 19
              plasma cholesterol level + 19
              plasma phytosterol level + 0
paths to the root