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CLINICAL MEASUREMENT - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:coat/hair morphological measurement
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Accession:CMO:0001807 term browser browse the term
Definition:Any measurement of the physical form or structure of the hair, wool, or fur of an organism, that is, of either a single cylindrical, keratinized, often pigmented filament characteristically growing from the epidermis of a mammal, or of the aggregate of all such filaments.


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coat/hair color measurement term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Coatc1 Coat color QTL1 IDA RGD PMID:19363126 RGD:2313383 NCBI chr14:20,189,386...65,189,386 JBrowse link
pigmented coat/hair area to total coat/hair area ratio term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Coatc2 Coat color QTL 2 IDA RGD PMID:20364790 RGD:2317982 NCBI chr14:33,039,912...61,783,215 JBrowse link
Q Coatc3 Coat color QTL 3 IDA RGD PMID:20364790 RGD:2317982 NCBI chr15:21,021,342...52,831,189 JBrowse link
Q Coatc4 Coat color QTL 4 IDA RGD PMID:20364790 RGD:2317982 NCBI chr17:3,336,972...24,030,841 JBrowse link
pigmented dorsal coat/hair area to total dorsal coat/hair area ratio term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Coatc4 Coat color QTL 4 IDA RGD PMID:20364790 RGD:2317982 NCBI chr17:3,336,972...24,030,841 JBrowse link
pigmented ventral coat/hair area to total ventral coat/hair area ratio term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Coatc10 Coat color QTL 10 IDA RGD PMID:26796131 RGD:10755346 NCBI chr 7:13,952,179...58,952,179 JBrowse link
Q Coatc11 Coat color QTL 11 IDA RGD PMID:26796131 RGD:10755346 NCBI chr 7:24,731,465...69,731,465 JBrowse link
Q Coatc12 Coat color QTL 12 IDA RGD PMID:26796131 RGD:10755346 NCBI chr 7:38,547,706...83,547,706 JBrowse link
Q Coatc13 Coat color QTL 13 IDA RGD PMID:26796131 RGD:10755346 NCBI chr13:77,694,986...114,033,958 JBrowse link
Q Coatc14 Coat color QTL 14 IDA RGD PMID:26796131 RGD:10755346 NCBI chr12:1...23,035,872 JBrowse link
Q Coatc15 Coat color QTL 15 IDA RGD PMID:26796131 RGD:10755346 NCBI chr14:21,457,565...66,457,565 JBrowse link
Q Coatc16 Coat color QTL 16 IDA RGD PMID:26796131 RGD:10755346 NCBI chr 3:130,006,659...175,006,659 JBrowse link
Q Coatc5 Coat color QTL 5 IDA RGD PMID:20364790 RGD:2317982 NCBI chr17:32,055,882...77,922,655 JBrowse link
Q Coatc6 Coat color QTL 6 IDA RGD PMID:26796131 RGD:10755346 NCBI chr 2:10,555,275...55,555,275 JBrowse link
Q Coatc7 Coat color QTL 7 IDA RGD PMID:26796131 RGD:10755346 NCBI chr 2:31,272,379...76,272,379 JBrowse link
Q Coatc8 Coat color QTL 8 IDA RGD PMID:26796131 RGD:10755346 NCBI chr 2:35,133,202...80,133,202 JBrowse link
Q Coatc9 Coat color QTL 9 IDA RGD PMID:26796131 RGD:10755346 NCBI chr 7:9,758,045...54,758,045 JBrowse link

Term paths to the root
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  clinical measurement 2369
    body morphological measurement 763
      coat/hair morphological measurement 16
        coat/hair color measurement + 16
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.