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CLINICAL MEASUREMENT - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:bone cross-sectional area measurement
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Accession:CMO:0001693 term browser browse the term
Definition:Any measurement of the extent of a plane through, that is, perpendicular to the longest axis of a bone, the hard, rigid form of connective tissue constituting most of the skeleton of vertebrates and composed chiefly of calcium salts.


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bone polar moment of inertia term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss57 Bone structure and strength QTL 57 IDA 1.0E-4 3.7 update to tibia specific term RGD PMID:19113924 RGD:2312767 NCBI chr 1:43,284,731...118,944,897 JBrowse link
Q Bss63 Bone structure and strength QTL 63 IDA 1.0E-4 1.4 update to tibia specific term RGD PMID:19113924 RGD:2312767 NCBI chr10:5,387,014...50,387,014 JBrowse link
Q Bss69 Bone structure and strength QTL 69 IDA 1.0E-4 3.5 update to tibia specific term RGD PMID:19113924 RGD:2312767 NCBI chr 1:11,481,312...82,174,945 JBrowse link
bone trabecular cross-sectional area term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss14 Bone structure and strength QTL 14 IDA 16.4 RGD PMID:16461031 RGD:1578307 NCBI chr 4:87,327,165...132,327,165 JBrowse link
Q Bss16 Bone structure and strength QTL 16 IDA 4.4 RGD PMID:16461031 RGD:1578307 NCBI chr 6:11,735,669...72,593,685 JBrowse link
Q Bss19 Bone structure and strength QTL 19 IDA 4.3 RGD PMID:16461031 RGD:1578307 NCBI chr15:22,806,240...98,288,169 JBrowse link
Q Bss9 Bone structure and strength QTL 9 IDA 6.3 RGD PMID:16461031 RGD:1578307 NCBI chr 1:509,108...43,284,926 JBrowse link
femoral neck cortical cross-sectional area term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bmd31 Bone mineral density QTL 31 IDA 1.0E-4 4.5 RGD PMID:18282130 RGD:2293456 NCBI chr17:4,354,487...27,028,127 JBrowse link
Q Bmd38 Bone mineral density QTL 38 IDA 4.4 RGD PMID:18282130 RGD:2293456 NCBI chr 5:8,948,228...53,948,228 JBrowse link
Q Bss10 Bone structure and strength QTL 10 IDA 4.0 RGD PMID:16461031 RGD:1578307 NCBI chr 1:49,393,172...159,356,837 JBrowse link
Q Bss11 Bone structure and strength QTL 11 IDA 4.7 RGD PMID:16461031 RGD:1578307 NCBI chr 2:114,837,527...211,674,221 JBrowse link
Q Bss17 Bone structure and strength QTL 17 IDA 3.8 RGD PMID:16461031 RGD:1578307 NCBI chr 9:3,368,652...13,533,896 JBrowse link
Q Bss21 Bone structure and strength QTL 21 IDA 3.5 RGD PMID:16461031 RGD:1578307 NCBI chr18:11,791,518...83,218,561 JBrowse link
femoral neck cross-sectional area term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bmd29 Bone mineral density QTL 29 IDA 1.0E-4 5.4 RGD PMID:18282130 RGD:2293456 NCBI chr 7:47,651,439...92,651,439 JBrowse link
Q Bmd90 Bone mineral density QTL 90 IDA 5.2 RGD PMID:18282130 RGD:2293456 NCBI chr10:49,444,551...81,709,989 JBrowse link
Q Bmd91 Bone mineral density QTL 91 IDA 3.5 RGD PMID:18282130 RGD:2293456 NCBI chr 9:23,754,144...83,851,531 JBrowse link
Q Bss12 Bone structure and strength QTL 12 IDA 8.9 RGD PMID:16461031 RGD:1578307 NCBI chr 4:60,220,938...105,220,938 JBrowse link
Q Bss20 Bone structure and strength QTL 20 IDA 3.7 RGD PMID:16461031 RGD:1578307 NCBI chr18:11,791,518...83,218,561 JBrowse link
femoral neck polar moment of inertia term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bmd32 Bone mineral density QTL 32 IDA 1.0E-4 5.1 RGD PMID:18282130 RGD:2293456 NCBI chr 7:47,651,439...92,651,439 JBrowse link
Q Bmd33 Bone mineral density QTL 33 IDA 1.0E-4 4.5 RGD PMID:18282130 RGD:2293456 NCBI chr10:49,444,551...81,709,989 JBrowse link
Q Bss13 Bone structure and strength QTL 13 IDA 8.0 RGD PMID:16461031 RGD:1578307 NCBI chr 4:60,220,938...105,220,938 JBrowse link
femur cross-sectional area term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss22 Bone structure and strength QTL 22 IDA 1.0E-4 33.52 RGD PMID:18158281 RGD:2293455 NCBI chr 1:171,629,477...216,629,477 JBrowse link
Q Bss23 Bone structure and strength QTL 23 IDA 1.0E-4 5.18 RGD PMID:18158281 RGD:2293455 NCBI chr 6:1...42,487,980 JBrowse link
Q Bss24 Bone structure and strength QTL 24 IDA 1.0E-4 6.71 RGD PMID:18158281 RGD:2293455 NCBI chr 7:47,651,439...92,651,439 JBrowse link
Q Bss25 Bone structure and strength QTL 25 IDA 1.0E-4 10.96 RGD PMID:18158281 RGD:2293455 NCBI chr10:69,738,412...107,211,142 JBrowse link
Q Bss26 Bone structure and strength QTL 26 IDA 1.0E-4 4.6 RGD PMID:18158281 RGD:2293455 NCBI chr13:65,103,704...106,807,694 JBrowse link
femur midshaft cortical cross-sectional area term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss111 Bone structure and strength QTL 111 IDA 6.4 RGD PMID:16059631 RGD:1549683 NCBI chr 2:211,744,537...249,053,267 JBrowse link
Q Bss112 Bone structure and strength QTL 112 IDA 7.0 RGD PMID:16059631 RGD:1549683 NCBI chr 5:106,906,205...151,906,205 JBrowse link
Q Bss27 Bone structure and strength QTL 27 IDA 1.0E-4 18.63 RGD PMID:18158281 RGD:2293455 NCBI chr 1:171,629,477...216,629,477 JBrowse link
Q Bss28 Bone structure and strength QTL 28 IDA 1.0E-4 6.79 RGD PMID:18158281 RGD:2293455 NCBI chr 6:1...42,487,980 JBrowse link
Q Bss29 Bone structure and strength QTL 29 IDA 1.0E-4 5.31 RGD PMID:18158281 RGD:2293455 NCBI chr15:11,111,142...56,111,142 JBrowse link
Q Bss3 Bone structure and strength QTL 3 IDA 11.0 RGD PMID:16059631 RGD:1549683 NCBI chr 4:109,827,074...154,827,074 JBrowse link
femur midshaft polar moment of inertia term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss105 Bone structure and strength QTL 105 IDA 8.1 RGD PMID:16059631 RGD:1549683 NCBI chr 4:109,827,074...154,827,074 JBrowse link
Q Bss2 Bone structure and strength QTL 2 IDA 7.5 RGD PMID:16059631 RGD:1549683 NCBI chr 2:211,744,537...249,053,267 JBrowse link
Q Bss30 Bone structure and strength QTL 30 IDA 1.0E-4 32.65 RGD PMID:18158281 RGD:2293455 NCBI chr 1:171,629,477...216,629,477 JBrowse link
Q Bss31 Bone structure and strength QTL 31 IDA 1.0E-4 5.05 RGD PMID:18158281 RGD:2293455 NCBI chr 6:1...42,487,980 JBrowse link
Q Bss32 Bone structure and strength QTL 32 IDA 1.0E-4 7.64 RGD PMID:18158281 RGD:2293455 NCBI chr 7:47,651,439...92,651,439 JBrowse link
Q Bss33 Bone structure and strength QTL 33 IDA 1.0E-4 9.34 RGD PMID:18158281 RGD:2293455 NCBI chr10:69,738,412...107,211,142 JBrowse link
Q Bss34 Bone structure and strength QTL 34 IDA 1.0E-4 4.61 RGD PMID:18158281 RGD:2293455 NCBI chr13:65,103,704...106,807,694 JBrowse link
Q Bss35 Bone structure and strength QTL 35 IDA 2.0E-4 4.59 RGD PMID:18158281 RGD:2293455 NCBI chr18:28,964,853...73,964,853 JBrowse link
Q Bss4 Bone structure and strength QTL 4 IDA 9.2 RGD PMID:16059631 RGD:1549683 NCBI chr 5:106,906,205...151,906,205 JBrowse link
Q Bss5 Bone structure and strength QTL 5 IDA 9.8 RGD PMID:16059631 RGD:1549683 NCBI chr 7:24,751,841...69,751,841 JBrowse link
Q Bss7 Bone structure and strength QTL 7 IDA 6.4 RGD PMID:16059631 RGD:1549683 NCBI chr15:75,788,062...101,769,107 JBrowse link
lumbar vertebra cortical cross-sectional area term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss44 Bone structure and strength QTL 44 IDA 1.0E-4 10.97 RGD PMID:18158281 RGD:2293455 NCBI chr 2:43,162,366...148,478,373 JBrowse link
Q Bss45 Bone structure and strength QTL 45 IDA 1.0E-4 5.13 RGD PMID:18158281 RGD:2293455 NCBI chr16:37,752,156...82,752,156 JBrowse link
Q Bss46 Bone structure and strength QTL 46 IDA 1.0E-4 8.8 RGD PMID:18158281 RGD:2293455 NCBI chr18:11,791,518...63,636,873 JBrowse link
lumbar vertebra cross-sectional area term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bmd2 Bone mineral density QTL 2 IDA 1.0E-4 13.4 L5 lumbar vertebra total cross-sectional area RGD PMID:16180139 RGD:1553896 NCBI chr 2:114,837,675...212,549,332 JBrowse link
Q Bss41 Bone structure and strength QTL 41 IDA 1.0E-4 9.38 RGD PMID:18158281 RGD:2293455 NCBI chr 1:171,629,477...216,629,477 JBrowse link
Q Bss42 Bone structure and strength QTL 42 IDA 1.0E-4 7.25 RGD PMID:18158281 RGD:2293455 NCBI chr 7:47,651,439...92,651,439 JBrowse link
Q Bss43 Bone structure and strength QTL 43 IDA 1.0E-4 5.33 RGD PMID:18158281 RGD:2293455 NCBI chr10:59,209,888...104,209,888 JBrowse link
lumbar vertebra trabecular cross-sectional area term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss47 Bone structure and strength QTL 47 IDA 1.0E-4 7.25 RGD PMID:18158281 RGD:2293455 NCBI chr 1:171,629,477...216,629,477 JBrowse link
Q Bss48 Bone structure and strength QTL 48 IDA 1.0E-4 16.05 RGD PMID:18158281 RGD:2293455
Q Bss49 Bone structure and strength QTL 49 IDA 1.0E-4 5.61 RGD PMID:18158281 RGD:2293455 NCBI chr12:10,474,137...46,669,029 JBrowse link
Q Bss50 Bone structure and strength QTL 50 IDA 3.0E-4 4.64 RGD PMID:18158281 RGD:2293455 NCBI chr18:1...34,291,613 JBrowse link
tibia midshaft cross-sectional area term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss54 Bone structure and strength QTL 54 IDA 1.0E-4 3.5 RGD PMID:19113924 RGD:2312767 NCBI chr 1:43,284,731...118,944,897 JBrowse link
Q Bss55 Bone structure and strength QTL 55 IDA 1.0E-4 3.2 RGD PMID:19113924 RGD:2312767 NCBI chr 1:43,284,731...118,944,897 JBrowse link
Q Bss61 Bone structure and strength QTL 61 IDA 1.0E-4 0.9 RGD PMID:19113924 RGD:2312767 NCBI chr10:5,387,014...50,387,014 JBrowse link
Q Bss62 Bone structure and strength QTL 62 IDA 1.0E-4 1.5 RGD PMID:19113924 RGD:2312767 NCBI chr10:5,387,014...50,387,014 JBrowse link
Q Bss72 Bone structure and strength QTL 72 IDA 1.0E-4 2.6 RGD PMID:19113924 RGD:2312767 NCBI chr 3:27,494,621...50,302,886 JBrowse link
Q Bss73 Bone structure and strength QTL 73 IDA 1.5 RGD PMID:19113924 RGD:2312767 NCBI chr 3:27,494,621...50,302,886 JBrowse link
Q Bss76 Bone structure and strength QTL 76 IDA 1.0E-4 3.0 RGD PMID:19113924 RGD:2312767 NCBI chr 8:30,848,154...82,460,899 JBrowse link
Q Bss79 Bone structure and strength QTL 79 IDA 1.0E-4 1.8 RGD PMID:19113924 RGD:2312767 NCBI chr10:62,057,807...107,057,807 JBrowse link
Q Bss82 Bone structure and strength QTL 82 IDA 1.0E-4 3.0 RGD PMID:19113924 RGD:2312767 NCBI chr14:37,669,719...82,669,719 JBrowse link
tibia midshaft endosteal cross-sectional area term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss56 Bone structure and strength QTL 56 IDA 1.0E-4 2.4 RGD PMID:19113924 RGD:2312767 NCBI chr 1:43,284,731...118,944,897 JBrowse link
Q Bss77 Bone structure and strength QTL 77 IDA 1.0E-4 3.1 RGD PMID:19113924 RGD:2312767 NCBI chr 8:30,848,154...82,460,899 JBrowse link
Q Bss80 Bone structure and strength QTL 80 IDA 1.0E-4 2.0 RGD PMID:19113924 RGD:2312767 NCBI chr10:62,057,807...107,057,807 JBrowse link
Q Bss83 Bone structure and strength QTL 83 IDA 1.0E-4 2.9 RGD PMID:19113924 RGD:2312767 NCBI chr14:37,669,719...82,669,719 JBrowse link
tibia midshaft total cross-sectional area term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss59 Bone structure and strength QTL 59 IDA 1.0E-4 2.9 RGD PMID:19113924 RGD:2312767 NCBI chr 5:3,844,018...26,141,981 JBrowse link
Q Bss65 Bone structure and strength QTL 65 IDA 1.0E-4 3.9 RGD PMID:19113924 RGD:2312767 NCBI chr15:60,990,468...73,690,657 JBrowse link
Q Bss71 Bone structure and strength QTL 71 IDA 1.0E-4 2.6 RGD PMID:19113924 RGD:2312767 NCBI chr 1:118,944,747...163,944,747 JBrowse link
Q Bss85 Bone structure and strength QTL 85 IDA 1.0E-4 0.8 RGD PMID:19113924 RGD:2312767 NCBI chr18:14,951,337...59,951,337 JBrowse link
Q Bss86 Bone structure and strength QTL 86 IDA 4.1 RGD PMID:20699128 RGD:4889918 NCBI chr 1:53,895,117...82,174,945 JBrowse link
Q Bss91 Bone structure and strength QTL 91 IDA 4.0 RGD PMID:20699128 RGD:4889918 NCBI chr10:82,564,856...92,369,470 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  clinical measurement 2369
    body morphological measurement 733
      skeleton morphological measurement 201
        bone morphological measurement 179
          bone area measurement 82
            bone cross-sectional area measurement 73
              bone trabecular cross-sectional area + 8
              calculated bone cross-sectional area measurement + 17
              femur cross-sectional area + 36
              tibia midshaft cross-sectional area + 19
              vertebra cross-sectional area + 11
Path 2
Term Annotations click to browse term
  clinical measurement 2369
    musculoskeletal system measurement 297
      skeletal system measurement 235
        skeleton morphological measurement 201
          bone morphological measurement 179
            bone area measurement 82
              bone cross-sectional area measurement 73
                bone trabecular cross-sectional area + 8
                calculated bone cross-sectional area measurement + 17
                femur cross-sectional area + 36
                tibia midshaft cross-sectional area + 19
                vertebra cross-sectional area + 11
paths to the root