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CLINICAL MEASUREMENT - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:calculated bone cross-sectional area measurement
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Accession:CMO:0001682 term browser browse the term
Definition:A measurement which has been normalized, adjusted or derived by a mathematical process or computation, of the extent of a plane through, that is, perpendicular to the longest axis of a bone, the hard, rigid form of connective tissue constituting most of the skeleton of vertebrates and composed chiefly of calcium salts.



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bone polar moment of inertia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss57 Bone structure and strength QTL 57 IDA update to tibia specific term RGD PMID:19113924 RGD:2312767 NCBI chr 1:43,284,731...118,944,897 JBrowse link
Q Bss63 Bone structure and strength QTL 63 IDA update to tibia specific term RGD PMID:19113924 RGD:2312767 NCBI chr10:5,387,014...50,387,014 JBrowse link
Q Bss69 Bone structure and strength QTL 69 IDA update to tibia specific term RGD PMID:19113924 RGD:2312767 NCBI chr 1:11,481,312...82,174,945 JBrowse link
femoral neck polar moment of inertia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bmd32 Bone mineral density QTL 32 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 7:47,651,439...92,651,439 JBrowse link
Q Bmd33 Bone mineral density QTL 33 IDA RGD PMID:18282130 RGD:2293456 NCBI chr10:49,444,551...81,709,989 JBrowse link
Q Bss13 Bone structure and strength QTL 13 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 4:60,220,938...105,220,938 JBrowse link
femur midshaft polar moment of inertia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss105 Bone structure and strength QTL 105 IDA RGD PMID:16059631 RGD:1549683 NCBI chr 4:109,827,074...154,827,074 JBrowse link
Q Bss2 Bone structure and strength QTL 2 IDA RGD PMID:16059631 RGD:1549683 NCBI chr 2:211,744,537...249,053,267 JBrowse link
Q Bss30 Bone structure and strength QTL 30 IDA RGD PMID:18158281 RGD:2293455 NCBI chr 1:171,629,477...216,629,477 JBrowse link
Q Bss31 Bone structure and strength QTL 31 IDA RGD PMID:18158281 RGD:2293455 NCBI chr 6:1...42,487,980 JBrowse link
Q Bss32 Bone structure and strength QTL 32 IDA RGD PMID:18158281 RGD:2293455 NCBI chr 7:47,651,439...92,651,439 JBrowse link
Q Bss33 Bone structure and strength QTL 33 IDA RGD PMID:18158281 RGD:2293455 NCBI chr10:69,738,412...107,211,142 JBrowse link
Q Bss34 Bone structure and strength QTL 34 IDA RGD PMID:18158281 RGD:2293455 NCBI chr13:65,103,704...106,807,694 JBrowse link
Q Bss35 Bone structure and strength QTL 35 IDA RGD PMID:18158281 RGD:2293455 NCBI chr18:28,964,853...73,964,853 JBrowse link
Q Bss4 Bone structure and strength QTL 4 IDA RGD PMID:16059631 RGD:1549683 NCBI chr 5:106,906,205...151,906,205 JBrowse link
Q Bss5 Bone structure and strength QTL 5 IDA RGD PMID:16059631 RGD:1549683 NCBI chr 7:24,751,841...69,751,841 JBrowse link
Q Bss7 Bone structure and strength QTL 7 IDA RGD PMID:16059631 RGD:1549683 NCBI chr15:75,788,062...101,769,107 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  clinical measurement 2369
    body morphological measurement 733
      skeleton morphological measurement 201
        bone morphological measurement 179
          bone area measurement 82
            bone cross-sectional area measurement 73
              calculated bone cross-sectional area measurement 17
                bone polar moment of inertia + 17
                calculated femur cross-sectional area + 14
Path 2
Term Annotations click to browse term
  clinical measurement 2369
    musculoskeletal system measurement 297
      skeletal system measurement 235
        skeleton morphological measurement 201
          bone morphological measurement 179
            bone area measurement 82
              bone cross-sectional area measurement 73
                calculated bone cross-sectional area measurement 17
                  bone polar moment of inertia + 17
                  calculated femur cross-sectional area + 14
paths to the root