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CLINICAL MEASUREMENT - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:immune system measurement
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Accession:CMO:0001579 term browser browse the term
Definition:Any value resulting from the quantification of a morphological or physiological parameter of the immune system, a complex set of interconnected and interdependent cellular and molecular components having the primary functions of distinguishing self from not self and of defense against foreign organisms or substances.


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blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Cdexp1 CD45RC expression in CD8 T cells QTL 1 IDA RGD PMID:15322174 RGD:1302824 NCBI chr 9:1,024,537...67,509,080 JBrowse link
Q Cdexp2 CD45RC expression in CD8 T cells QTL 2 IDA RGD PMID:15322174 RGD:1302824 NCBI chr20:3,621,649...10,078,919 JBrowse link
blood eosinophil count term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Leukc1 Leukocyte quantity QTL 1 IDA RGD PMID:16151696 RGD:5135221 NCBI chr19:44,340,214...55,283,277 JBrowse link
Q Leukc2 Leukocyte quantity QTL 2 IDA RGD PMID:16151696 RGD:5135221 NCBI chr 2:118,111,229...149,559,726 JBrowse link
Q Leukc3 Leukocyte quantity QTL 3 IDA RGD PMID:17090969 RGD:5135222 NCBI chr 1:218,108,584...224,054,420 JBrowse link
blood T lymphocyte count term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Neuinf1 Neuroinflammation QTL 1 IDA RGD PMID:14586010 RGD:1358788 NCBI chr 5:154,828,214...166,875,058 JBrowse link
calculated serum anti-rat type 2 collagen autoantibody titer term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Ciaa1 CIA Autoantibody QTL 1 IDA RGD PMID:11001927 RGD:61067 NCBI chr20:2,646,395...4,597,031 JBrowse link
Q Ciaa4 CIA Autoantibody QTL 4 IDA RGD PMID:11001927 RGD:61067 NCBI chr 4:126,395,976...167,139,601 JBrowse link
Q Ciaa5 CIA Autoantibody QTL 5 IDA RGD PMID:11001927 RGD:61067 NCBI chr 5:94,858,972...143,070,159 JBrowse link
calculated serum anti-type 2 collagen antibody titer term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Ciaa2 CIA Autoantibody QTL 2 IDA RGD PMID:10857786 RGD:61066 NCBI chr10:63,221,094...107,211,142 JBrowse link
Q Ciaa3 CIA Autoantibody QTL 3 IDA RGD PMID:10857786 RGD:61066 NCBI chr 9:7,954,720...22,071,169 JBrowse link
IFNG-secreting splenocyte count term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Ean2 Experimental allergic neuritis QTL 2 IDA RGD PMID:19299744 RGD:2306769 NCBI chr 4:83,428,419...95,853,334 JBrowse link
Q Ean4 Experimental allergic neuritis QTL 4 IDA RGD PMID:19299744 RGD:2306769 NCBI chr10:84,022,321...93,995,963 JBrowse link
Q Ean5 Experimental allergic neuritis QTL 5 IDA RGD PMID:19299744 RGD:2306769 NCBI chr10:72,552,416...93,995,749 JBrowse link
lymph node-specific lymphocyte tracer radioactivity level to kidney-specific lymphocyte tracer radioactivity level ratio term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Nka1 Natural killer alloreactivity QTL 1 IDA RGD PMID:8642329 RGD:61085
mononuclear cell count term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Neudeg2 Neurodegradation QTL 2 IDA RGD PMID:14586010 RGD:1358788 NCBI chr 5:24,838,710...44,045,280 JBrowse link
serum anti-DNA antibody level term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Iresp1 Immunoglobin response QTL1 IDA RGD PMID:10898507 RGD:619646 NCBI chr20:9,039,719...13,461,775 JBrowse link
serum immunoglobulin E level term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Iresp2 Immunoglobin response QTL2 IDA RGD PMID:10898507 RGD:619646 NCBI chr10:22,918,268...36,400,810 JBrowse link
Q Iresp3 Immunoglobin response QTL3 IDA RGD PMID:10898507 RGD:619646 NCBI chr 9:2,745,799...5,857,951 JBrowse link
serum immunoglobulin G level term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Pia33 Pristane induced arthritis QTL 33 IDA RGD PMID:14674011 RGD:2302026
serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Pia28 Pristane induced arthritis QTL 28 IDA RGD PMID:14674011 RGD:2302026 NCBI chr 4:73,630,210...118,630,210 JBrowse link
Q Pia32 Pristane induced arthritis QTL 32 IDA RGD PMID:14674011 RGD:2302026 NCBI chr 4:105,789,505...150,789,505 JBrowse link
serum immunoglobulin G1 level term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Pia34 Pristane induced arthritis QTL 34 IDA RGD PMID:14674011 RGD:2302026
Q Pia35 Pristane induced arthritis QTL 35 IDA RGD PMID:14674011 RGD:2302026 NCBI chr 1:216,255,568...260,522,016 JBrowse link
Q Pia36 Pristane induced arthritis QTL 36 IDA RGD PMID:14674011 RGD:2302026 NCBI chr 1:43,333,002...88,333,002 JBrowse link
Q Pia37 Pristane induced arthritis QTL 37 IDA RGD PMID:14674011 RGD:2302026 NCBI chr12:13,198,157...46,669,029 JBrowse link
Q Pia38 Pristane induced arthritis QTL 38 IDA RGD PMID:14674011 RGD:2302026 NCBI chr12:1...44,503,507 JBrowse link
serum immunoglobulin G2a level term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Pia39 Pristane induced arthritis QTL 39 IDA RGD PMID:14674011 RGD:2302026 NCBI chr14:8,267,090...53,267,090 JBrowse link
serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Pia27 Pristane induced arthritis QTL 27 IDA RGD PMID:14674011 RGD:2302026 NCBI chr11:82,566,545...83,440,803 JBrowse link
Q Pia29 Pristane induced arthritis QTL 29 IDA RGD PMID:14674011 RGD:2302026 NCBI chr16:21,735,975...66,735,975 JBrowse link
Q Pia30 Pristane induced arthritis QTL 30 IDA RGD PMID:14674011 RGD:2302026 NCBI chr 3:27,936,919...72,936,919 JBrowse link
Q Pia31 Pristane induced arthritis QTL 31 IDA RGD PMID:14674011 RGD:2302026 NCBI chr 1:10,992,065...55,992,065 JBrowse link
thymus weight to body weight ratio term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Thym1 Thymus enlargement QTL 1 IDA RGD PMID:10792781 RGD:70859 NCBI chr 1:136,829,932...181,829,932 JBrowse link
Q Thym2 Thymus enlargement QTL 2 IDA RGD PMID:8672128 RGD:634747 NCBI chr13:46,197,976...84,753,113 JBrowse link
Q Thym3 Thymus enlargement QTL 3 IDA RGD PMID:10792781 RGD:70859 NCBI chr 1:136,829,932...181,829,932 JBrowse link
Q Thym4 Thymus enlargement QTL 4 IDA RGD PMID:10792781 RGD:70859 NCBI chr 1:197,814,409...242,814,409 JBrowse link
Q Tsu1 Thymus enlargement suppressive QTL 1 IDA RGD PMID:9234381 RGD:634729 NCBI chr 3:50,437,504...115,638,231 JBrowse link
thymus wet weight term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Esta1 Estrogen-induced thymic atrophy QTL 1 IDA RGD PMID:16688534 RGD:1579780 NCBI chr10:21,329,805...61,345,413 JBrowse link
Q Esta2 Estrogen-induced thymic atrophy QTL 2 IDA RGD PMID:16688534 RGD:1579780 NCBI chr 2:189,599,258...226,936,289 JBrowse link
Q Esta3 Estrogen-induced thymic atrophy QTL 3 IDA RGD PMID:16688534 RGD:1579780 NCBI chr 2:136,916,935...189,599,348 JBrowse link
Q Esta4 Estrogen-induced thymic atrophy QTL 4 IDA RGD PMID:18420736 RGD:2292503 NCBI chr 3:47,233,211...147,415,807 JBrowse link
Q Stresp18 Stress response QTL 18 IDA RGD PMID:16151695 RGD:1549862 NCBI chr 5:27,955,440...72,955,440 JBrowse link
Q Stresp21 Stress response QTL 21 IDA RGD PMID:16151695 RGD:1549862 NCBI chr10:6,375,746...51,375,746 JBrowse link
Q Stresp22 Stress response QTL 22 IDA RGD PMID:16151695 RGD:1549862 NCBI chr16:35,288,870...80,288,870 JBrowse link
total white blood cell count term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Wbc1 White blood cell count QTL 1 IDA RGD PMID:14532335 RGD:727992 NCBI chr 5:125,392,826...139,989,768 JBrowse link
Q Wbc2 White blood cell count QTL 2 IDA RGD PMID:11721057 RGD:70849 NCBI chr12:24,234,777...31,894,213 JBrowse link
white blood cell count term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Wbc3 White blood cell count QTL 3 IDA RGD PMID:19526527 RGD:2316974 NCBI chr 5:105,999,803...150,999,803 JBrowse link
Q Wbc4 White blood cell count QTL 4 IDA RGD PMID:19526527 RGD:2316974 NCBI chr 7:1...35,342,956 JBrowse link
Q Wbc5 White blood cell count QTL 5 IDA RGD PMID:19526527 RGD:2316974 NCBI chr 8:8,736,635...53,736,635 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  clinical measurement 2369
    immune system measurement 49
      bone marrow measurement + 0
      immune cell measurement + 16
      immunoglobulin measurement + 21
      lymphatic system measurement + 0
      spleen measurement + 3
      thymus measurement + 12
paths to the root