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CLINICAL MEASUREMENT - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:immune system measurement
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Accession:CMO:0001579 term browser browse the term
Definition:Any value resulting from the quantification of a morphological or physiological parameter of the immune system, a complex set of interconnected and interdependent cellular and molecular components having the primary functions of distinguishing self from not self and of defense against foreign organisms or substances.


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blood CD45RChigh CD8 T cell count to CD45RClow CD8 T cell count ratio term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Cdexp1 CD45RC expression in CD8 T cells QTL 1 IDA RGD PMID:15322174 RGD:1302824 NCBI chr 9:10,869,391...15,509,311 JBrowse link
Q Cdexp2 CD45RC expression in CD8 T cells QTL 2 IDA RGD PMID:15322174 RGD:1302824 NCBI chr20:4,855,468...10,800,530 JBrowse link
blood eosinophil count term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Leukc1 Leukocyte quantity QTL 1 IDA RGD PMID:16151696 RGD:5135221 NCBI chr19:48,830,712...60,220,581 JBrowse link
Q Leukc2 Leukocyte quantity QTL 2 IDA RGD PMID:16151696 RGD:5135221 NCBI chr 2:121,750,419...155,965,721 JBrowse link
Q Leukc3 Leukocyte quantity QTL 3 IDA RGD PMID:17090969 RGD:5135222 NCBI chr 1:238,220,189...244,401,301 JBrowse link
blood T lymphocyte count term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Neuinf1 Neuroinflammation QTL 1 IDA RGD PMID:14586010 RGD:1358788 NCBI chr 5:161,084,664...173,707,219 JBrowse link
calculated serum anti-rat type 2 collagen autoantibody titer term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Ciaa1 CIA Autoantibody QTL 1 IDA RGD PMID:11001927 RGD:61067 NCBI chr20:3,151,815...6,896,013 JBrowse link
Q Ciaa4 CIA Autoantibody QTL 4 IDA RGD PMID:11001927 RGD:61067 NCBI chr 4:125,884,464...168,047,091 JBrowse link
Q Ciaa5 CIA Autoantibody QTL 5 IDA RGD PMID:11001927 RGD:61067 NCBI chr 5:97,921,932...149,030,144 JBrowse link
calculated serum anti-type 2 collagen antibody titer term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Ciaa2 CIA Autoantibody QTL 2 IDA RGD PMID:10857786 RGD:61066 NCBI chr10:65,590,122...110,590,122 JBrowse link
Q Ciaa3 CIA Autoantibody QTL 3 IDA RGD PMID:10857786 RGD:61066 NCBI chr 9:5,724,254...25,692,342 JBrowse link
IFNG-secreting splenocyte count term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Ean2 Experimental allergic neuritis QTL 2 IDA RGD PMID:19299744 RGD:2306769 NCBI chr 4:84,475,257...97,479,149 JBrowse link
Q Ean4 Experimental allergic neuritis QTL 4 IDA RGD PMID:19299744 RGD:2306769 NCBI chr10:86,977,861...97,308,569 JBrowse link
Q Ean5 Experimental allergic neuritis QTL 5 IDA RGD PMID:19299744 RGD:2306769 NCBI chr10:75,045,391...97,308,358 JBrowse link
lymph node-specific lymphocyte tracer radioactivity level to kidney-specific lymphocyte tracer radioactivity level ratio term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Nka1 Natural killer alloreactivity QTL 1 IDA RGD PMID:8642329 RGD:61085
mononuclear cell count term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Neudeg2 Neurodegradation QTL 2 IDA RGD PMID:14586010 RGD:1358788 NCBI chr 5:24,956,212...44,747,071 JBrowse link
serum anti-DNA antibody level term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Iresp1 Immunoglobin response QTL1 IDA RGD PMID:10898507 RGD:619646 NCBI chr20:9,655,642...14,411,641 JBrowse link
serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Pia28 Pristane induced arthritis QTL 28 IDA RGD PMID:14674011 RGD:2302026 NCBI chr 4:75,258,970...120,258,970 JBrowse link
Q Pia32 Pristane induced arthritis QTL 32 IDA RGD PMID:14674011 RGD:2302026 NCBI chr 4:105,277,348...150,277,348 JBrowse link
serum immunoglobulin G1 level term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Pia34 Pristane induced arthritis QTL 34 IDA RGD PMID:14674011 RGD:2302026
Q Pia35 Pristane induced arthritis QTL 35 IDA RGD PMID:14674011 RGD:2302026 NCBI chr 1:236,265,430...281,265,430 JBrowse link
Q Pia36 Pristane induced arthritis QTL 36 IDA RGD PMID:14674011 RGD:2302026 NCBI chr 1:41,907,249...86,907,249 JBrowse link
Q Pia37 Pristane induced arthritis QTL 37 IDA RGD PMID:14674011 RGD:2302026 NCBI chr12:18,729,043...52,716,770 JBrowse link
Q Pia38 Pristane induced arthritis QTL 38 IDA RGD PMID:14674011 RGD:2302026 NCBI chr12:2,513,442...47,513,442 JBrowse link
serum immunoglobulin G2a level term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Pia39 Pristane induced arthritis QTL 39 IDA RGD PMID:14674011 RGD:2302026 NCBI chr14:10,539,977...55,539,977 JBrowse link
serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Pia27 Pristane induced arthritis QTL 27 IDA RGD PMID:14674011 RGD:2302026 NCBI chr11:86,714,475...87,444,587 JBrowse link
Q Pia29 Pristane induced arthritis QTL 29 IDA RGD PMID:14674011 RGD:2302026 NCBI chr16:24,846,541...69,846,541 JBrowse link
Q Pia30 Pristane induced arthritis QTL 30 IDA RGD PMID:14674011 RGD:2302026 NCBI chr 3:29,321,714...74,321,714 JBrowse link
Q Pia31 Pristane induced arthritis QTL 31 IDA RGD PMID:14674011 RGD:2302026 NCBI chr 1:13,629,251...58,629,251 JBrowse link
serum total immunoglobulin E level term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Iresp2 Immunoglobin response QTL2 IDA RGD PMID:10898507 RGD:619646 NCBI chr10:22,402,817...38,204,229 JBrowse link
Q Iresp3 Immunoglobin response QTL3 IDA RGD PMID:10898507 RGD:619646 NCBI chr 9:2,005,583...3,309,921 JBrowse link
serum total immunoglobulin G level term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Pia33 Pristane induced arthritis QTL 33 IDA RGD PMID:14674011 RGD:2302026
thymus weight to body weight ratio term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Thym1 Thymus enlargement QTL 1 IDA RGD PMID:10792781 RGD:70859 NCBI chr 1:153,655,976...198,655,976 JBrowse link
Q Thym2 Thymus enlargement QTL 2 IDA RGD PMID:8672128 RGD:634747 NCBI chr13:51,577,824...90,675,199 JBrowse link
Q Thym3 Thymus enlargement QTL 3 IDA RGD PMID:10792781 RGD:70859 NCBI chr 1:153,655,976...198,655,976 JBrowse link
Q Thym4 Thymus enlargement QTL 4 IDA RGD PMID:10792781 RGD:70859 NCBI chr 1:215,828,102...260,828,102 JBrowse link
Q Tsu1 Thymus enlargement suppressive QTL 1 IDA RGD PMID:9234381 RGD:634729 NCBI chr 3:51,822,008...120,917,851 JBrowse link
thymus wet weight term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Esta1 Estrogen-induced thymic atrophy QTL 1 IDA RGD PMID:16688534 RGD:1579780 NCBI chr10:21,707,766...64,648,311 JBrowse link
Q Esta2 Estrogen-induced thymic atrophy QTL 2 IDA RGD PMID:16688534 RGD:1579780 NCBI chr 2:204,585,642...243,689,611 JBrowse link
Q Esta3 Estrogen-induced thymic atrophy QTL 3 IDA RGD PMID:16688534 RGD:1579780 NCBI chr 2:142,053,350...204,585,731 JBrowse link
Q Esta4 Estrogen-induced thymic atrophy QTL 4 IDA RGD PMID:18420736 RGD:2292503 NCBI chr 3:48,561,928...155,263,151 JBrowse link
Q Stresp18 Stress response QTL 18 IDA RGD PMID:16151695 RGD:1549862 NCBI chr 5:29,078,899...74,078,899 JBrowse link
Q Stresp21 Stress response QTL 21 IDA RGD PMID:16151695 RGD:1549862 NCBI chr10:7,521,450...52,521,450 JBrowse link
Q Stresp22 Stress response QTL 22 IDA RGD PMID:16151695 RGD:1549862 NCBI chr16:39,000,021...84,000,021 JBrowse link
total white blood cell count term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Wbc1 White blood cell count QTL 1 IDA RGD PMID:14532335 RGD:727992 NCBI chr 5:130,531,300...145,726,262 JBrowse link
Q Wbc2 White blood cell count QTL 2 IDA RGD PMID:11721057 RGD:70849 NCBI chr12:27,285,473...36,161,779 JBrowse link
white blood cell count term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Wbc3 White blood cell count QTL 3 IDA RGD PMID:19526527 RGD:2316974 NCBI chr 5:111,278,451...156,278,451 JBrowse link
Q Wbc4 White blood cell count QTL 4 IDA RGD PMID:19526527 RGD:2316974 NCBI chr 7:1...38,119,654 JBrowse link
Q Wbc5 White blood cell count QTL 5 IDA RGD PMID:19526527 RGD:2316974 NCBI chr 8:11,448,251...56,448,251 JBrowse link

Term paths to the root
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Term Annotations click to browse term
  clinical measurement 2369
    immune system measurement 49
      bone marrow measurement + 0
      immune cell measurement + 16
      immunoglobulin measurement + 21
      lymphatic system measurement + 0
      spleen measurement + 3
      thymus measurement + 12
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.