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CLINICAL MEASUREMENT - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:disease process measurement
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Accession:CMO:0001107 term browser browse the term
Definition:Any measurement that deals with the process or development of a disease state, for example, the onset, progression or severity of the disease or its symptoms.


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age at onset/diagnosis of type 1 diabetes mellitus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Iddm24 Insulin dependent diabetes mellitus QTL 24 IDA RGD PMID:17389329 RGD:1624306 NCBI chr 8:120,870,965...127,609,447 JBrowse link
Q Iddm31 Insulin dependent diabetes mellitus QTL 31 IDA RGD PMID:19168599 RGD:2303106 NCBI chr14:4,833,233...19,909,932 JBrowse link
Q Iddm32 Insulin dependent diabetes mellitus QTL 32 IDA RGD PMID:19168599 RGD:2303106 NCBI chr 2:80,631,950...149,614,623 JBrowse link
Q Iddm33 Insulin dependent diabetes mellitus QTL 33 IDA RGD PMID:19168599 RGD:2303106 NCBI chr 2:221,488,355...254,121,739 JBrowse link
Q Iddm34 Insulin dependent diabetes mellitus QTL 34 IDA RGD PMID:19168599 RGD:2303106 NCBI chr 7:100,028,953...145,729,302 JBrowse link
Q Iddm35 Insulin dependent diabetes mellitus QTL 35 IDA RGD PMID:19168599 RGD:2303106 NCBI chr18:4,407,513...62,570,466 JBrowse link
Q Iddm54 Insulin dependent diabetes mellitus QTL 54 IDA RGD PMID:24920533 RGD:10043114 NCBI chr 2:149,614,466...205,573,168 JBrowse link
Q Iddm55 Insulin dependent diabetes mellitus QTL 55 IDA RGD PMID:24920533 RGD:10043114 NCBI chr 2:205,572,952...207,612,467 JBrowse link
age of onset/diagnosis of cataract term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Lecl1 Lens clarity QTL 1 IDA RGD PMID:11252169 RGD:68701 NCBI chr 8:21,464,919...91,140,553 JBrowse link
Q Lecl2 Lens clarity QTL 2 IDA RGD PMID:11252169 RGD:68701 NCBI chr15:39,480,797...62,596,410 JBrowse link
arthritic paw count term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Pia16 Pristane induced arthritis QTL 16 IDA RGD PMID:12817024 RGD:631850 NCBI chr 6:48,432,758...108,268,790 JBrowse link
Q Pia17 Pristane induced arthritis QTL 17 IDA RGD PMID:12817024 RGD:631850 NCBI chr 7:81,645,773...140,745,067 JBrowse link
Q Pia4 Pristane induced arthritis QTL 4 IDA RGD PMID:9843218 RGD:61089 NCBI chr12:15,714,609...35,964,508 JBrowse link
Q Pia6 Pristane induced arthritis QTL 6 IDA RGD PMID:9843218 RGD:61089 NCBI chr14:20,266,223...43,957,628 JBrowse link
enterocolitis severity score term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Ginf1 Gastrointestinal inflammation QTL 1 IDA RGD PMID:19526527 RGD:2316974 NCBI chr 8:7,368,076...52,368,076 JBrowse link
experimental arthritis severity measurement term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Cia10 Collagen induced arthritis QTL 10 IDA RGD PMID:9870869 RGD:61063 NCBI chr 2:194,998,627...239,998,627 JBrowse link
Q Cia27 Collagen induced arthritis QTL 27 IDA RGD PMID:9870869 RGD:61063 NCBI chr10:79,927,661...112,626,471 JBrowse link
Q Cia9 Collagen induced arthritis QTL 9 IDA RGD PMID:9870869 RGD:61063
Q Scwia1 Streptococcal cell wall induced arthritis QTL 1 IDA RGD PMID:10331011 RGD:61064 NCBI chr 4:105,682,594...150,682,594 JBrowse link
experimental autoimmune encephalomyelitis duration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Eae23 Experimental allergic encephalomyelitis QTL 23 IDA RGD PMID:16624898 RGD:2293859 NCBI chr10:57,180,653...63,976,874 JBrowse link
Q Eae25 Experimental allergic encephalomyelitis QTL 25 IDA RGD PMID:19675581 RGD:2317591 NCBI chr 4:79,559,380...84,053,053 JBrowse link
Q Eaey Experimental allergic encephalomyelitis QTL y IDA RGD PMID:10640775 RGD:61031 NCBI chr18:48,519,299...62,570,427 JBrowse link
experimental autoimmune encephalomyelitis severity score term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Eae1 Experimental allergic encephalomyelitis QTL 1 IDA RGD PMID:10640775 RGD:61031 NCBI chr20:4,039,113...5,875,448 JBrowse link
Q Eae18 Experimental allergic encephalomyelitis QTL 18 IDA RGD PMID:11486278 RGD:1302800 NCBI chr10:67,988,218...110,992,091 JBrowse link
Q Eae18a Experimental allergic encephalomyelitis QTL 18a IDA RGD PMID:15240732 RGD:1302437 NCBI chr10:55,678,976...60,404,791 JBrowse link
Q Eae18b Experimental allergic encephalomyelitis QTL 18b IDA RGD PMID:15240732 RGD:1302437 NCBI chr10:64,550,912...70,202,084 JBrowse link
Q Eae19 Experimental allergic encephalomyelitis QTL 19 IDA RGD PMID:15716504 RGD:1549617 NCBI chr15:83,947,714...98,027,710 JBrowse link
Q Eae24 Experimental allergic encephalomyelitis QTL 24 IDA RGD PMID:19675581 RGD:2317591 NCBI chr 4:65,987,814...73,372,824 JBrowse link
Q Eae25 Experimental allergic encephalomyelitis QTL 25 IDA RGD PMID:19675581 RGD:2317591 NCBI chr 4:79,559,380...84,053,053 JBrowse link
Q Eae26 Experimental allergic encephalomyelitis QTL 26 IDA RGD PMID:19675581 RGD:2317591 NCBI chr 4:89,777,552...99,067,150 JBrowse link
Q Eae29 Experimental allergic encephalomyelitis QTL 29 IDA RGD PMID:21041731 RGD:4888518 NCBI chr 1:5,655,772...85,706,974 JBrowse link
Q Eae30 Experimental allergic encephalomyelitis QTL 30 IDA RGD PMID:20072140 RGD:6892695 NCBI chr 1:130,458,716...135,612,014 JBrowse link
Q Eae31 Experimental allergic encephalomyelitis QTL 31 IDA RGD PMID:20072140 RGD:6892695 NCBI chr 1:193,968,438...205,603,226 JBrowse link
Q Eae32 Experimental allergic encephalomyelitis QTL 32 IDA RGD PMID:20856809 RGD:4889889 NCBI chr17:27,690,959...38,110,914 JBrowse link
Q Eae33 Experimental allergic encephalomyelitis QTL 33 IDA RGD PMID:20856809 RGD:4889889 NCBI chr17:53,475,180...90,690,466 JBrowse link
Q Eaez Experimental allergic encephalomyelitis QTL z IDA RGD PMID:10640775 RGD:61031 NCBI chr18:12,597,179...15,099,007 JBrowse link
experimental autoimmune neuritis severity score term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Ean1 Experimental allergic neuritis QTL 1 IDA RGD PMID:15342198 RGD:2306736
Q Ean6 Experimental allergic neuritis QTL 6 IDA RGD PMID:19299744 RGD:2306769 NCBI chr12:22,650,702...27,190,240 JBrowse link
experimental autoimmune uveitis score term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Eau1 Experimental allergic uveoretinitis QTL 1 IDA RGD PMID:10323205 RGD:61073 NCBI chr 4:70,773,471...132,455,556 JBrowse link
Q Eau2 Experimental allergic uveoretinitis QTL 2 IDA RGD PMID:10323205 RGD:61073 NCBI chr12:10,256,890...31,723,732 JBrowse link
Q Eau3 Experimental allergic uveoretinitis QTL 3 IDA RGD PMID:10323205 RGD:61073 NCBI chr10:35,669,465...46,851,407 JBrowse link
Q Eau4 Experimental allergic uveoretinitis QTL 4 IDA RGD PMID:18453595 RGD:2296064 NCBI chr 3:146,232,777...177,699,992 JBrowse link
Q Eau5 Experimental allergic uveoretinitis QTL 5 IDA RGD PMID:18453595 RGD:2296064 NCBI chr 2:217,498,545...254,132,424 JBrowse link
Q Eau6 Experimental allergic uveoretinitis QTL 6 IDA RGD PMID:18453595 RGD:2296064 NCBI chr 7:93,726,906...138,726,906 JBrowse link
Q Eau7 Experimental allergic uveoretinitis QTL 7 IDA RGD PMID:18453595 RGD:2296064 NCBI chr10:35,669,573...36,185,929 JBrowse link
Q Eau8 Experimental allergic uveoretinitis QTL 8 IDA RGD PMID:18453595 RGD:2296064 NCBI chr19:21,407,787...62,275,575 JBrowse link
Q Eau9 Experimental allergic uveoretinitis QTL 9 IDA RGD PMID:18453595 RGD:2296064 NCBI chr10:68,305,037...85,514,044 JBrowse link
hydrocephalus severity score term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bvd1 Brain ventricular dilatation QTL 1 IDA RGD PMID:15473982 RGD:1302890 NCBI chr 9:81,411,073...119,983,851 JBrowse link
Q Bvd2 Brain ventricular dilatation QTL 2 IDA RGD PMID:15473982 RGD:1302890 NCBI chr10:96,520,816...110,992,275 JBrowse link
Q Bvd3 Brain ventricular dilatation QTL 3 IDA RGD PMID:15473982 RGD:1302890 NCBI chr11:72,720,029...86,994,795 JBrowse link
Q Bvd4 Brain ventricular dilatation QTL 4 IDA RGD PMID:15473982 RGD:1302890 NCBI chr17:56,224,296...86,731,080 JBrowse link
Q Bvd5 Brain ventricular dilatation QTL 5 IDA RGD PMID:15473982 RGD:1302890 NCBI chr17:33,303,627...85,321,557 JBrowse link
Q Bvd6 Brain ventricular dilatation QTL 6 IDA RGD PMID:11178739 RGD:68693 NCBI chr11:69,342,319...86,312,439 JBrowse link
hydronephrosis severity score term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Kiddil1 Kidney dilation QTL 1 IDA RGD PMID:18523158 RGD:2293631 NCBI chr 6:84,763,275...108,464,097 JBrowse link
Q Kiddil2 Kidney dilation QTL 2 IDA RGD PMID:18523158 RGD:2293631 NCBI chr 6:22,042,854...84,763,421 JBrowse link
Q Kiddil3 Kidney dilation QTL 3 IDA RGD PMID:18523158 RGD:2293631 NCBI chr 6:84,763,275...108,464,097 JBrowse link
Q Kiddil4 Kidney dilation QTL 4 IDA RGD PMID:18523158 RGD:2293631 NCBI chr 6:22,042,854...84,763,421 JBrowse link
Q Kiddil5 Kidney dilation QTL 5 IDA RGD PMID:18523158 RGD:2293631 NCBI chr 2:42,776,916...169,852,800 JBrowse link
Q Kiddil6 Kidney dilation QTL 6 IDA RGD PMID:18523158 RGD:2293631 NCBI chr 2:42,776,916...195,645,082 JBrowse link
Q Kiddil7 Kidney dilation QTL 7 IDA RGD PMID:18523158 RGD:2293631 NCBI chr 2:236,318,496...264,899,009 JBrowse link
Q Kiddil8 Kidney dilation QTL 8 IDA RGD PMID:18523158 RGD:2293631 NCBI chr 2:236,318,496...264,899,009 JBrowse link
Q Kiddil9 Kidney dilation QTL 9 IDA RGD PMID:18523158 RGD:2293631 NCBI chr 4:120,400,597...146,942,261 JBrowse link
length of intestine affected by colonic aganglionosis to total length of colon ratio term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Gdil1 Gastrointestinal dilation QTL 1 IDA RGD PMID:22132166 RGD:6480215 NCBI chr 2:58,344,100...75,687,607 JBrowse link
Q Gdil2 Gastrointestinal dilation QTL 2 IDA RGD PMID:25790447 RGD:10402048 NCBI chr 2:23,280,647...75,687,607 JBrowse link
liver granuloma severity score term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Ginf2 Gastrointestinal inflammation QTL 2 IDA RGD PMID:19526527 RGD:2316974 NCBI chr 8:7,368,076...52,368,076 JBrowse link
Q Ginf3 Gastrointestinal inflammation QTL 3 IDA RGD PMID:19526527 RGD:2316974 NCBI chr17:53,871,488...90,843,779 JBrowse link
logarithm of the intestinal adult Trichinella spiralis count term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Tspe1 Trichinella spiralis expulsion QTL 1 IDA RGD PMID:16465509 RGD:1578305 NCBI chr 9:66,757,444...71,010,122 JBrowse link
number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Vetf10 Vascular elastic tissue fragility QTL 10 IDA RGD PMID:17356016 RGD:8662443 NCBI chr10:6,229,095...75,983,805 JBrowse link
Q Vetf3 Vascular elastic tissue fragility QTL 3 IDA RGD PMID:17356016 RGD:8662443 NCBI chr 5:1,666,587...71,552,720 JBrowse link
number of ruptures of the internal elastic lamina of the renal arteries term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Vetf4 Vascular elastic tissue fragility QTL 4 IDA RGD PMID:17356016 RGD:8662443 NCBI chr 3:61,241,033...165,369,047 JBrowse link
patent ductus arteriosus score term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Vetf5 Vascular elastic tissue fragility QTL 5 IDA RGD PMID:17356016 RGD:8662443 NCBI chr 8:30,918,112...107,206,309 JBrowse link
Q Vetf6 Vascular elastic tissue fragility QTL 6 IDA RGD PMID:17356016 RGD:8662443 NCBI chr 9:41,261,034...98,606,834 JBrowse link
post-insult time to onset of experimental arthritis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Pia2 Pristane induced arthritis QTL 2 IDA RGD PMID:9843218 RGD:61089 NCBI chr 4:18,222,187...61,039,065 JBrowse link
Q Pia3 Pristane induced arthritis QTL 3 IDA RGD PMID:9843218 RGD:61089 NCBI chr 6:99,273,921...144,792,678 JBrowse link
post-insult time to onset of experimental autoimmune encephalomyelitis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Eae11 Experimental allergic encephalomyelitis QTL 11 IDA RGD PMID:10640775 RGD:61031 NCBI chr 4:33,637,803...37,685,319 JBrowse link
Q Eae22 Experimental allergic encephalomyelitis QTL 22 IDA RGD PMID:15634914 RGD:1547849
Q Eae24 Experimental allergic encephalomyelitis QTL 24 IDA RGD PMID:19675581 RGD:2317591 NCBI chr 4:65,987,814...73,372,824 JBrowse link
Q Eae25 Experimental allergic encephalomyelitis QTL 25 IDA RGD PMID:19675581 RGD:2317591 NCBI chr 4:79,559,380...84,053,053 JBrowse link
Q Eaex Experimental allergic encephalomyelitis QTL x IDA RGD PMID:10640775 RGD:61031 NCBI chr 5:56,902,367...101,902,367 JBrowse link
post-insult time to onset of T-cell lymphoma term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Tls1 T-lymphoma susceptibility QTL 1 IDA RGD PMID:10360666 RGD:619600 NCBI chr 5:93,273,130...138,273,130 JBrowse link
post-insult time to trigeminal nerve neurilemmoma formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Schws5 Schwannoma susceptibility QTL 5 IDA RGD PMID:16003739 RGD:1559300
pyometritis severity score term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Eutr1 Estrogen induced uterine response QTL 1 IDA RGD PMID:16284801 RGD:1559292 NCBI chr 5:1,525,098...78,720,537 JBrowse link
Q Eutr2 Estrogen induced uterine response QTL 2 IDA RGD PMID:16284802 RGD:1559291 NCBI chr 5:35,225,432...108,092,802 JBrowse link

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  clinical measurement 2369
    disease process measurement 80
      disease onset/diagnosis measurement + 19
      disease progression measurement + 3
      disease severity measurement + 61
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.