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CLINICAL MEASUREMENT - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:alimentary/gastrointestinal measurement
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Accession:CMO:0000995 term browser browse the term
Definition:Any measurement to assess the morphological or physiological state of the alimentary/gastrointestinal tract, that is, the system of organs within multicellular animals that takes in food, digests it to extract energy and nutrients, and expels the remaining waste. The major functions of the alimentary/GI/digestive tract are ingestion, digestion, absorption, and defecation.


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defecation measurement term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr35 Anxiety related response QTL 35 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:8,052,189...53,052,189 JBrowse link
defecation rate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr30 Anxiety related response QTL 30 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:63,812,687...108,812,687 JBrowse link
Q Anxrr40 Anxiety related response QTL 40 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:63,812,687...108,812,687 JBrowse link
Q Anxrr49 Anxiety related response QTL 49 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:63,812,687...108,812,687 JBrowse link
stomach tumor depth of invasion term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Gcr3 Gastric cancer resistance QTL 3 IDA RGD PMID:10706129 RGD:69698 NCBI chr16:19,398,187...70,590,230 JBrowse link
stomach tumor diameter term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Gcr3 Gastric cancer resistance QTL 3 IDA RGD PMID:10706129 RGD:69698 NCBI chr16:19,398,187...70,590,230 JBrowse link
stomach tumor susceptibility score term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Gcr1 Gastric cancer resistance QTL 1 IDA RGD PMID:10706129 RGD:69698 NCBI chr 4:119,705,414...146,087,100 JBrowse link
Q Gcr2 Gastric cancer resistance QTL 2 IDA RGD PMID:10706129 RGD:69698 NCBI chr 3:3,285,929...28,136,884 JBrowse link
Q Gcs1 Gastric cancer susceptibility QTL1 IDA RGD PMID:10706129 RGD:69698 NCBI chr15:83,947,714...111,246,239 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  clinical measurement 2369
    alimentary/gastrointestinal measurement 8
      alimentary/gastrointestinal disease incidence/prevalence measurement + 0
      defecation measurement + 4
      stomach measurement + 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.