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CLINICAL MEASUREMENT - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:brain measurement
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Accession:CMO:0000911 term browser browse the term
Definition:Any measurement of all or part of the brain, the portion of the central nervous system enclosed within the cranium which is composed of gray matter and white matter and is the primary center for the regulation and control of bodily activities, receiving and interpreting sensory impulses, and transmitting information to the muscles and body organs.
Synonyms:xref: MA:0000168


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brain infarction volume term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bp49 Blood pressure QTL 49 IDA RGD PMID:9241273 RGD:61056 NCBI chr 5:61,612,600...102,331,727 JBrowse link
brain neurotensin receptor 1 density term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Alcrsp12 Alcohol response QTL 12 IDA RGD PMID:15608595 RGD:1334439 NCBI chr 9:32,385,133...77,385,133 JBrowse link
Q Alcrsp13 Alcohol response QTL 13 IDA RGD PMID:15608595 RGD:1334439 NCBI chr 9:2,355,722...47,355,722 JBrowse link
Q Alcrsp14 Alcohol response QTL 14 IDA RGD PMID:15608595 RGD:1334439 NCBI chr15:1...43,521,446 JBrowse link
brain spike-and-wave discharge frequency term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Swd3 Spike wave discharge measurement QTL 3 IDA RGD PMID:15030491 RGD:1553898 NCBI chr 4:57,101,077...92,990,863 JBrowse link
Q Swd5 Spike wave discharge measurement QTL 5 IDA RGD PMID:15030491 RGD:1553898 NCBI chr 8:17,666,555...62,666,555 JBrowse link
brain spike-and-wave discharge rate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Swd6 Spike wave discharge measurement QTL 6 IDA RGD PMID:23903052 RGD:7794751 NCBI chr 2:38,990,848...49,401,197 JBrowse link
Q Swd7 Spike wave discharge measurement QTL 7 IDA RGD PMID:23903052 RGD:7794751 NCBI chr 2:147,582,596...153,667,782 JBrowse link
brain spike-and-wave discharge severity grade term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Swd4 Spike wave discharge measurement QTL 4 IDA RGD PMID:15030491 RGD:1553898 NCBI chr 7:96,630,946...141,630,946 JBrowse link
brain total spike-and-wave discharge duration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Swd2 Spike wave discharge measurement QTL 2 IDA RGD PMID:15270755 RGD:1302436 NCBI chr 5:157,319,671...171,194,163 JBrowse link
mean duration of a single type I spike-and-wave discharge train term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Swd1 Spike wave discharge measurement QTL 1 IDA RGD PMID:15270755 RGD:1302436 NCBI chr 9:107,198,926...110,038,814 JBrowse link
percentage of study population developing cerebrovascular lesions during a period of time term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Strs4 Sensitivity to stroke QTL 4 IDA RGD PMID:23690346 RGD:7411685 NCBI chr 1:79,689,548...124,689,548 JBrowse link
Q Strs5 Sensitivity to stroke QTL 5 IDA RGD PMID:23690346 RGD:7411685 NCBI chr18:51,609,032...67,502,266 JBrowse link
Q Strs6 Sensitivity to stroke QTL 6 IDA RGD PMID:23690346 RGD:7411685 NCBI chr 5:140,387,005...143,846,157 JBrowse link
Q Strs7 Sensitivity to stroke QTL 7 IDA RGD PMID:23690346 RGD:7411685 NCBI chr15:42,757,241...56,027,084 JBrowse link
post-insult time to onset of cerebrovascular lesion term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Strs1 Sensitivity to stroke QTL 1 IDA RGD PMID:8696337 RGD:61093 NCBI chr 1:133,946,489...178,946,489 JBrowse link
Q Strs2 Sensitivity to stroke QTL 2 IDA RGD PMID:8696337 RGD:61093 NCBI chr 5:142,309,061...173,707,219 JBrowse link
Q Strs3 Sensitivity to stroke QTL 3 IDA RGD PMID:8696337 RGD:61093 NCBI chr 4:39,208,222...84,208,222 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  clinical measurement 2369
    organ measurement 485
      brain measurement 18
        brain lesion measurement + 8
        brain lipid measurement + 0
        brain mineral measurement + 0
        brain morphological measurement + 3
        brain oxygen measurement 0
        brain physiological measurement + 7
        brain ventricle measurement + 0
        forebrain monoamine hormone measurement + 0
        medulla oblongata monoamine hormone measurement + 0
        midbrain/pons monoamine hormone measurement + 0
Path 2
Term Annotations click to browse term
  clinical measurement 2369
    nervous system measurement 63
      central nervous system measurement 29
        brain measurement 18
          brain lesion measurement + 8
          brain lipid measurement + 0
          brain mineral measurement + 0
          brain morphological measurement + 3
          brain oxygen measurement 0
          brain physiological measurement + 7
          brain ventricle measurement + 0
          forebrain monoamine hormone measurement + 0
          medulla oblongata monoamine hormone measurement + 0
          midbrain/pons monoamine hormone measurement + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.