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CLINICAL MEASUREMENT - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:tissue composition measurement
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Accession:CMO:0000107 term browser browse the term
Definition:A measurement that indicates the compositional nature of a tissue or set of tissues.


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aorta wall extracellular elastin dry weight to aorta wall dry weight ratio term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Vetf7 Vascular elastic tissue fragility QTL 7 IDA RGD PMID:17356016 RGD:8662443 NCBI chr 2:83,754,907...237,610,852 JBrowse link
aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Vetf8 Vascular elastic tissue fragility QTL 8 IDA RGD PMID:17356016 RGD:8662443 NCBI chr 2:110,965,721...155,965,721 JBrowse link
Q Vetf9 Vascular elastic tissue fragility QTL 9 IDA RGD PMID:17356016 RGD:8662443 NCBI chr 2:169,852,670...243,026,643 JBrowse link
brain neurotensin receptor 1 density term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Alcrsp12 Alcohol response QTL 12 IDA RGD PMID:15608595 RGD:1334439 NCBI chr 9:32,385,133...77,385,133 JBrowse link
Q Alcrsp13 Alcohol response QTL 13 IDA RGD PMID:15608595 RGD:1334439 NCBI chr 9:2,355,722...47,355,722 JBrowse link
Q Alcrsp14 Alcohol response QTL 14 IDA RGD PMID:15608595 RGD:1334439 NCBI chr15:1...43,521,446 JBrowse link
heart left ventricle natriuretic peptide A level term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Lanf1 Left ventricular atrial natriuretic factor QTL 1 IDA RGD PMID:11157676 RGD:619659 NCBI chr 5:157,319,671...173,707,219 JBrowse link
kidney 20-HETE level term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Rf54 Renal function QTL 54 IDA RGD PMID:16396943 RGD:1578407 NCBI chr 5:133,313,668...138,454,239 JBrowse link
kidney renin level term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Rf47 Renal function QTL 47 IDA RGD PMID:15452030 RGD:1302893 NCBI chr13:35,301,263...107,975,663 JBrowse link
liver cholesterol level term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Hpcl1 Hepatic cholesterol level QTL 1 IDA RGD PMID:9600105 RGD:629576 NCBI chr10:36,584,373...53,645,194 JBrowse link
Q Hpcl2 Hepatic cholesterol level QTL 2 IDA RGD PMID:18071061 RGD:1643359 NCBI chr10:46,593,021...98,939,209 JBrowse link
liver copper weight to liver dry weight ratio term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Hcuc1 Hepatic copper content QTL 1 IDA RGD PMID:11741328 RGD:619607
Q Hcuc3 Hepatic copper content QTL 3 IDA RGD PMID:12094018 RGD:629572 NCBI chr 2:245,893,572...266,435,125 JBrowse link
Q Hcuc4 Hepatic copper content QTL 4 IDA RGD PMID:12094018 RGD:629572 NCBI chr10:69,348,459...75,983,662 JBrowse link
liver total copper weight term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Hcuc2 Hepatic copper content QTL 2 IDA RGD PMID:11741328 RGD:619607 NCBI chr16:1...41,240,957 JBrowse link
MHC Class II RT1A-positive spinal cord ventral horn area to total spinal cord ventral horn area ratio term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Neuinf2 Neuroinflammation QTL 2 IDA RGD PMID:14586010 RGD:1358788 NCBI chr10:6,229,289...6,429,075 JBrowse link
Q Neuinf3 Neuroinflammation QTL 3 IDA RGD PMID:14586010 RGD:1358788 NCBI chr10:2,847,625...5,460,218 JBrowse link
spinal cord beta-2 microglobulin mRNA level term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Neuinf10 Neuroinflammation QTL 10 IDA RGD PMID:19525015 RGD:2311085 NCBI chr11:32,155,520...82,443,118 JBrowse link
Q Neuinf12 Neuroinflammation QTL 12 IDA RGD PMID:19525015 RGD:2311085 NCBI chr15:1...62,301,382 JBrowse link
Q Neuinf8 Neuroinflammation QTL 8 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 1:58,354,072...161,711,996 JBrowse link
spinal cord Cd74 protein level term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Neuinf5 Neuroinflammation QTL 5 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 7:12,328,467...67,193,263 JBrowse link
spinal cord complement component 1, q subcomponent, B chain mRNA level term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Neuinf11 Neuroinflammation QTL 11 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 3:10,119,318...79,772,001 JBrowse link
Q Neuinf9 Neuroinflammation QTL 9 IDA RGD PMID:19525015 RGD:2311085 NCBI chr10:5,877,536...64,401,490 JBrowse link
spinal cord RT1-B protein level term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Neuinf4 Neuroinflammation QTL 4 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 1:1...28,468,970 JBrowse link
Q Neuinf6 Neuroinflammation QTL 6 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 7:1...34,147,172 JBrowse link
Q Neuinf7 Neuroinflammation QTL 7 IDA RGD PMID:19525015 RGD:2311085 NCBI chr10:75,544,754...112,626,471 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  clinical measurement 2369
    tissue composition measurement 26
      bioimpedance 0
      tissue cellular composition measurement + 0
      tissue molecular composition measurement + 26
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.