Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:Swertiamarin
go back to main search page
Accession:CHEBI:9370 term browser browse the term
Definition:A glycoside that has formula C16H22O10.
Synonyms:related_synonym: Formula=C16H22O10;   InChI=1S/C16H22O10/c1-2-7-14(24-6-8-13(21)23-4-3-16(7,8)22)26-15-12(20)11(19)10(18)9(5-17)25-15/h2,6-7,9-12,14-15,17-20,22H,1,3-5H2/t7-,9+,10+,11-,12+,14-,15-,16+/m0/s1;   InChIKey=HEYZWPRKKUGDCR-QBXMEVCASA-N;   SMILES=OC[C@H]1O[C@@H](O[C@@H]2OC=C3C(=O)OCC[C@@]3(O)[C@H]2C=C)[C@H](O)[C@@H](O)[C@@H]1O
 xref: CAS:17388-39-5;   KEGG:C09800;   KNApSAcK:C00003100
 xref_mesh: MESH:C013270


show annotations for term's descendants           Sort by:
Swertiamarin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acp3 acid phosphatase 3 multiple interactions EXP swertiamarin inhibits the reaction [Testosterone results in increased secretion of ACP3 protein] CTD PMID:27866977 NCBI chr 8:104,905,570...104,956,146
Ensembl chr 8:104,905,586...104,954,236 		JBrowse link
G Acta2 actin alpha 2, smooth muscle multiple interactions EXP swertiamarin inhibits the reaction [Testosterone results in increased expression of ACTA2 mRNA] CTD PMID:27866977 NCBI chr 1:231,746,527...231,759,307
Ensembl chr 1:231,746,548...231,759,554 		JBrowse link
G Ar androgen receptor multiple interactions EXP swertiamarin inhibits the reaction [Testosterone results in increased expression of AR protein] CTD PMID:27866977 NCBI chr  X:63,104,771...63,273,934
Ensembl chr  X:63,104,771...63,273,925 		JBrowse link
G Bax BCL2 associated X, apoptosis regulator multiple interactions EXP swertiamarin inhibits the reaction [Testosterone results in decreased expression of BAX protein] CTD PMID:27866977 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368 		JBrowse link
G Bcl2 BCL2, apoptosis regulator multiple interactions EXP swertiamarin inhibits the reaction [Testosterone results in increased expression of BCL2 protein] CTD PMID:27866977 NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Cdh1 cadherin 1 multiple interactions EXP swertiamarin inhibits the reaction [Testosterone results in decreased expression of CDH1 mRNA] CTD PMID:27866977 NCBI chr19:34,492,371...34,561,775
Ensembl chr19:34,492,371...34,561,775 		JBrowse link
G Egf epidermal growth factor multiple interactions EXP swertiamarin inhibits the reaction [Testosterone results in increased expression of EGF protein] CTD PMID:27866977 NCBI chr 2:218,219,408...218,302,359
Ensembl chr 2:218,219,415...218,302,064 		JBrowse link
G Esr1 estrogen receptor 1 multiple interactions EXP swertiamarin inhibits the reaction [Testosterone results in increased expression of ESR1 protein] CTD PMID:27866977 NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002 		JBrowse link
G Fgf2 fibroblast growth factor 2 multiple interactions EXP swertiamarin inhibits the reaction [Testosterone results in increased expression of FGF2 protein] CTD PMID:27866977 NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha multiple interactions EXP swertiamarin inhibits the reaction [Testosterone results in increased expression of HIF1A protein] CTD PMID:27866977 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Pcna proliferating cell nuclear antigen multiple interactions EXP swertiamarin inhibits the reaction [Testosterone results in increased expression of PCNA protein] CTD PMID:27866977 NCBI chr 3:119,499,039...119,502,911
Ensembl chr 3:119,498,810...119,502,995 		JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 multiple interactions EXP swertiamarin inhibits the reaction [Testosterone results in increased expression of PTGS2 protein] CTD PMID:27866977 NCBI chr13:62,163,936...62,172,193
Ensembl chr13:62,163,932...62,172,188 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 multiple interactions EXP swertiamarin inhibits the reaction [Testosterone results in increased expression of TWIST1 mRNA] CTD PMID:27866977 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
G Vim vimentin multiple interactions EXP swertiamarin inhibits the reaction [Testosterone results in increased expression of VIM mRNA] CTD PMID:27866977 NCBI chr17:76,668,701...76,677,186
Ensembl chr17:76,668,647...76,677,187 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19874
    chemical entity 19872
      atom 19872
        nonmetal atom 19794
          oxygen atom 19535
            oxygen molecular entity 19535
              organooxygen compound 19184
                carbohydrates and carbohydrate derivatives 15285
                  carbohydrate derivative 14300
                    glycosyl compound 13062
                      glycoside 11830
                        Swertiamarin 14
Path 2
Term Annotations click to browse term
  CHEBI ontology 19874
    subatomic particle 19872
      composite particle 19872
        hadron 19872
          baryon 19872
            nucleon 19872
              atomic nucleus 19872
                atom 19872
                  main group element atom 19811
                    p-block element atom 19811
                      carbon group element atom 19751
                        carbon atom 19748
                          organic molecular entity 19748
                            heteroorganic entity 19505
                              organochalcogen compound 19268
                                organooxygen compound 19184
                                  carbohydrates and carbohydrate derivatives 15285
                                    carbohydrate 15285
                                      carbohydrate derivative 14300
                                        glycosyl compound 13062
                                          glycoside 11830
                                            Swertiamarin 14
paths to the root