Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:panaxydol
go back to main search page
Accession:CHEBI:66723 term browser browse the term
Definition:An acetylenic compound that has formula C17H24O2.
Synonyms:exact_synonym: (3R)-8-[(2R,3S)-3-heptyloxiran-2-yl]oct-1-ene-4,6-diyn-3-ol
 related_synonym: Formula=C17H24O2;   InChI=1S/C17H24O2/c1-3-5-6-7-10-13-16-17(19-16)14-11-8-9-12-15(18)4-2/h4,15-18H,2-3,5-7,10,13-14H2,1H3/t15-,16+,17-/m1/s1;   InChIKey=GVLDSGIQZAFIAN-IXDOHACOSA-N;   SMILES=CCCCCCC[C@@H]1O[C@@H]1CC#CC#C[C@H](O)C=C
 xref: CAS:72800-72-7;   KNApSAcK:C00030922
 xref_mesh: MESH:C055778
 xref: PMID:2092947;   Reaxys:7926422


show annotations for term's descendants           Sort by:
panaxydol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afp alpha-fetoprotein decreases secretion ISO panaxydol results in decreased secretion of AFP protein CTD PMID:19450571 NCBI chr14:17,857,584...17,875,645
Ensembl chr14:17,857,584...17,875,649 		JBrowse link
G Alb albumin increases secretion ISO panaxydol results in increased secretion of ALB protein CTD PMID:19450571 NCBI chr14:17,891,564...17,907,043
Ensembl chr14:17,891,582...17,911,865 		JBrowse link
G Bdnf brain-derived neurotrophic factor multiple interactions EXP panaxydol inhibits the reaction [Oxygen deficiency results in decreased expression of BDNF mRNA]; panaxydol inhibits the reaction [Oxygen deficiency results in decreased secretion of BDNF protein]; panaxydol results in increased expression of and results in increased secretion of BDNF protein CTD PMID:18541227 PMID:18805406 NCBI chr 3:116,619,633...116,670,212
Ensembl chr 3:116,619,633...116,670,657 		JBrowse link
G Casp3 caspase 3 multiple interactions EXP panaxydol inhibits the reaction [Oxygen deficiency results in increased activity of CASP3 protein] CTD PMID:18541227 NCBI chr16:52,395,539...52,413,794
Ensembl chr16:52,395,540...52,413,732 		JBrowse link
G Cdkn1a cyclin-dependent kinase inhibitor 1A increases expression ISO panaxydol results in increased expression of CDKN1A mRNA; panaxydol results in increased expression of CDKN1A protein CTD PMID:19450571 NCBI chr20:7,150,820...7,161,373
Ensembl chr20:7,153,958...7,164,969 		JBrowse link
G Id1 inhibitor of DNA binding 1 decreases expression ISO panaxydol results in decreased expression of ID1 mRNA CTD PMID:19450571 NCBI chr 3:161,671,525...161,672,691
Ensembl chr 3:161,671,538...161,672,685 		JBrowse link
G Id2 inhibitor of DNA binding 2 decreases expression ISO panaxydol results in decreased expression of ID2 mRNA CTD PMID:19450571 NCBI chr 6:47,469,162...47,470,995
Ensembl chr 6:47,457,554...47,472,961 		JBrowse link
G Ngf nerve growth factor multiple interactions
increases secretion 		EXP panaxydol promotes the reaction [Oxygen deficiency results in increased expression of NGF mRNA]; panaxydol results in increased expression of and results in increased secretion of NGF protein
panaxydol results in increased secretion of NGF protein 		CTD PMID:18541227 PMID:18805406 NCBI chr 2:192,589,580...192,642,971
Ensembl chr 2:192,589,582...192,643,834 		JBrowse link
G Rb1 RB transcriptional corepressor 1 increases expression ISO panaxydol results in increased expression of RB1 protein; panaxydol results in increased expression of RB1 protein modified form CTD PMID:19450571 NCBI chr15:54,780,858...54,911,989
Ensembl chr15:54,780,858...54,911,857 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 20862
    chemical entity 20860
      molecular entity 20859
        main group molecular entity 20781
          gas molecular entity 18922
            oxirane 11487
              epoxide 11486
                panaxydol 9
Path 2
Term Annotations click to browse term
  CHEBI ontology 20862
    subatomic particle 20860
      composite particle 20860
        hadron 20860
          baryon 20860
            nucleon 20860
              atomic nucleus 20860
                atom 20860
                  main group element atom 20781
                    p-block element atom 20781
                      carbon group element atom 20715
                        carbon atom 20710
                          organic molecular entity 20710
                            organic molecule 20654
                              organic cyclic compound 20404
                                organic heterocyclic compound 19388
                                  organic heteromonocyclic compound 18212
                                    saturated organic heteromonocyclic parent 11505
                                      oxirane 11487
                                        epoxide 11486
                                          panaxydol 9
paths to the root