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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:lignin
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Accession:CHEBI:6457 term browser browse the term
Definition:A polyphenylpropanoid derived from three monolignol monomers: trans-p-coumaryl alcohol, coniferol and trans-sinapyl alcohol. There is extensive cross-linking and no defined primary structure.
Synonyms:alt_id: CHEBI:25037
 xref_mesh: MESH:D008031
 xref: Wikipedia:Lignin



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lignin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl2 C-C motif chemokine ligand 2 multiple interactions ISO Lignin analog inhibits the reaction [Dietary Fats results in increased expression of CCL2 mRNA] CTD PMID:32035863 NCBI chr10:67,005,424...67,007,222
Ensembl chr10:67,005,424...67,007,226
JBrowse link
G Esr1 estrogen receptor 1 affects binding EXP Lignin analog binds to ESR1 protein CTD PMID:27420082 NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002
JBrowse link
G Tgfb1 transforming growth factor, beta 1 multiple interactions ISO Lignin analog inhibits the reaction [Dietary Fats results in increased expression of TGFB1 mRNA] CTD PMID:32035863 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
G Tnf tumor necrosis factor multiple interactions ISO Lignin analog inhibits the reaction [Dietary Fats results in increased expression of TNF mRNA] CTD PMID:32035863 NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19878
    chemical entity 19876
      group 19829
        polyatomic entity 19828
          molecule 19719
            cyclic compound 19511
              organic cyclic compound 19493
                organic aromatic compound 19357
                  phenylpropanoid 11298
                    polyphenylpropanoid 4
                      lignin 4
                        guaiacyl lignin + 0
                        lignocellulose 0
                        p-hydroxyphenyl lignin 0
                        syringal lignin 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19878
    subatomic particle 19876
      composite particle 19876
        hadron 19876
          baryon 19876
            nucleon 19876
              atomic nucleus 19876
                atom 19876
                  main group element atom 19815
                    p-block element atom 19815
                      p-block molecular entity 19815
                        carbon group molecular entity 19755
                          organic molecular entity 19752
                            organic molecule 19704
                              organic cyclic compound 19493
                                organic aromatic compound 19357
                                  phenylpropanoid 11298
                                    polyphenylpropanoid 4
                                      lignin 4
                                        guaiacyl lignin + 0
                                        lignocellulose 0
                                        p-hydroxyphenyl lignin 0
                                        syringal lignin 0
paths to the root