Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:traumatic acid
go back to main search page
Accession:CHEBI:545687 term browser browse the term
Definition:A monounsaturated straight-chain dicarboxylic acid with the double bond at C-2; a plant wound-healing hormone.
Synonyms:exact_synonym: (2E)-dodec-2-enedioic acid
 related_synonym: 2E-dodecenedioic acid;   Dodec-2-enedioic acid;   Formula=C12H20O4;   InChI=1S/C12H20O4/c13-11(14)9-7-5-3-1-2-4-6-8-10-12(15)16/h7,9H,1-6,8,10H2,(H,13,14)(H,15,16)/b9-7+;   InChIKey=MAZWDMBCPDUFDJ-VQHVLOKHSA-N;   SMILES=OC(=O)CCCCCCCC\\C=C\\C(O)=O;   trans-2-dodecenedioic acid
 xref: Beilstein:1725762;   CAS:6402-36-4;   KEGG:C16308;   LIPID_MAPS_instance:LMFA01170002
 xref_mesh: MESH:C509089
 xref: PMID:16588378;   PMID:17791417


show annotations for term's descendants           Sort by:
traumatic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb1a ATP binding cassette subfamily B member 1A affects transport
multiple interactions		 EXP
ISO		 ABCB1 protein affects the transport of traumatic acid
Verapamil inhibits the reaction [ABCB1 protein affects the transport of traumatic acid]		 CTD PMID:39041788 NCBI chr 4:25,357,467...25,529,941
Ensembl chr 4:25,158,362...25,442,709 		JBrowse link
G Slc22a6 solute carrier family 22 member 6 affects transport
multiple interactions		 EXP
ISO		 SLC22A6 protein affects the transport of traumatic acid
Probenecid inhibits the reaction [SLC22A6 protein affects the transport of traumatic acid]		 CTD PMID:39041788 NCBI chr 1:205,522,579...205,531,179
Ensembl chr 1:205,522,729...205,531,173 		JBrowse link
G Slc22a8 solute carrier family 22 member 8 affects transport
multiple interactions		 EXP
ISO		 SLC22A8 protein affects the transport of traumatic acid
Probenecid inhibits the reaction [SLC22A8 protein affects the transport of traumatic acid]		 CTD PMID:39041788 NCBI chr 1:205,496,331...205,516,378
Ensembl chr 1:205,498,084...205,517,450 		JBrowse link
G Slco4c1 solute carrier organic anion transporter family, member 4C1 multiple interactions
affects transport		 ISO
EXP		 Ritonavir inhibits the reaction [SLCO4C1 protein affects the transport of traumatic acid] CTD PMID:39041788 NCBI chr 9:97,177,497...97,229,161
Ensembl chr 9:97,178,861...97,229,715 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19880
    role 19850
      biological role 19848
        molecular messenger 18665
          hormone 18495
            plant hormone 8879
              traumatic acid 4
                trans-2-dodecenedioyl-CoA 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19880
    subatomic particle 19878
      composite particle 19878
        hadron 19878
          baryon 19878
            nucleon 19878
              atomic nucleus 19878
                atom 19878
                  main group element atom 19817
                    p-block element atom 19817
                      carbon group element atom 19757
                        carbon atom 19754
                          organic molecular entity 19754
                            heteroorganic entity 19512
                              organochalcogen compound 19275
                                organooxygen compound 19191
                                  carbonyl compound 18914
                                    dicarboxylic acids and O-substituted derivatives 11132
                                      dicarboxylic acid 11126
                                        traumatic acid 4
                                          trans-2-dodecenedioyl-CoA 0
paths to the root