Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:3'-CMP
go back to main search page
Accession:CHEBI:53013 term browser browse the term
Definition:A cytidine 3'-phosphate compound with a monophosphate group at the 3'-position.
Synonyms:related_synonym: 3'-Cytidylic acid;   Cytidine 3'-monophosphate;   Cytidine 3'-phosphate;   Formula=C9H14N3O8P;   InChI=1S/C9H14N3O8P/c10-5-1-2-12(9(15)11-5)8-6(14)7(4(3-13)19-8)20-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H2,10,11,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1;   InChIKey=UOOOPKANIPLQPU-XVFCMESISA-N;   SMILES=Nc1ccn([C@@H]2O[C@H](CO)[C@@H](OP(O)(O)=O)[C@H]2O)c(=O)n1
 alt_id: CHEBI:1335;   CHEBI:23517;   CHEBI:28929;   CHEBI:41345;   CHEBI:41615
 xref: Beilstein:46971;   CAS:63-37-6;   CAS:84-52-6;   DrugBank:DB01961;   KEGG:C05822
 xref_mesh: MESH:D003568
 xref: MetaCyc:CPD-3711;   PDBeChem:C3P;   PMID:20602460;   PMID:5256413;   Reaxys:46971
 cyclic_relationship: is_conjugate_acid_of CHEBI:60875


show annotations for term's descendants           Sort by:
3'-CMP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdipt CDP-diacylglycerol--inositol 3-phosphatidyltransferase multiple interactions ISO [delta-hexachlorocyclohexane results in decreased activity of CDIPT protein] which results in decreased abundance of Cytidine Monophosphate; [Inositol promotes the reaction [CDIPT protein results in increased metabolism of Cytidine Diphosphate Diglycerides]] which results in increased abundance of Cytidine Monophosphate CTD PMID:2579070 NCBI chr 1:181,583,098...181,587,409
Ensembl chr 1:181,583,141...181,587,408 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19917
    role 19887
      biological role 19885
        biochemical role 19569
          metabolite 19577
            3'-CMP 1
              cytidylyl-(3'->5')-guanosine 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19917
    subatomic particle 19915
      composite particle 19915
        hadron 19915
          baryon 19915
            nucleon 19915
              atomic nucleus 19915
                atom 19915
                  main group element atom 19855
                    p-block element atom 19855
                      chalcogen 19583
                        oxygen atom 19576
                          oxygen molecular entity 19576
                            hydroxides 19380
                              oxoacid 18792
                                pnictogen oxoacid 14981
                                  phosphorus oxoacid 14583
                                    phosphoric acids 13930
                                      phosphoric acid 13930
                                        phosphoric acid derivative 13839
                                          phosphate 13838
                                            organic phosphate 13838
                                              carbohydrate phosphate 1964
                                                phospho sugar 1809
                                                  aldose phosphate 1806
                                                    aldopentose phosphate 1798
                                                      ribose phosphate 1793
                                                        ribonucleotide 1753
                                                          ribonucleoside 3'-phosphate 1
                                                            ribonucleoside 3'-monophosphate 1
                                                              pyrimidine ribonucleoside 3'-monophosphate 1
                                                                3'-CMP 1
                                                                  cytidylyl-(3'->5')-guanosine 0
paths to the root