Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:halometallate anion
go back to main search page
Accession:CHEBI:51518 term browser browse the term
Definition:An anionic coordination entity where halido ligands are coordinated to a metal centre.
Synonyms:related_synonym: halometallate anions


show annotations for term's descendants           Sort by:
ammonium hexachloroplatinate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ampd3 adenosine monophosphate deaminase 3 increases expression ISO ammonium hexachloroplatinate results in increased expression of AMPD3 mRNA CTD PMID:24211530 NCBI chr 1:164,884,823...164,929,899
Ensembl chr 1:164,885,320...164,929,887 		JBrowse link
G Aqp10 aquaporin 10 affects expression ISO ammonium hexachloroplatinate affects the expression of AQP10 mRNA CTD PMID:19527780 NCBI chr 2:175,402,609...175,407,677
Ensembl chr 2:175,403,263...175,406,815 		JBrowse link
G Ccr2 C-C motif chemokine receptor 2 decreases expression ISO ammonium hexachloroplatinate results in decreased expression of CCR2 mRNA CTD PMID:19371601 NCBI chr 8:123,734,465...123,742,483
Ensembl chr 8:123,734,430...123,742,100 		JBrowse link
G Ccr7 C-C motif chemokine receptor 7 increases expression ISO ammonium hexachloroplatinate results in increased expression of CCR7 mRNA CTD PMID:19371601 NCBI chr10:84,098,193...84,108,309
Ensembl chr10:84,097,381...84,108,309 		JBrowse link
G Cd86 CD86 molecule increases expression ISO ammonium hexachloroplatinate results in increased expression of CD86 protein CTD PMID:19665512 NCBI chr11:64,142,193...64,200,816
Ensembl chr11:64,163,828...64,200,818 		JBrowse link
G Creb1 cAMP responsive element binding protein 1 affects expression ISO ammonium hexachloroplatinate affects the expression of CREB1 mRNA CTD PMID:20385217 NCBI chr 9:65,903,511...65,972,562
Ensembl chr 9:65,903,547...65,970,816 		JBrowse link
G Crem cAMP responsive element modulator increases expression ISO ammonium hexachloroplatinate results in increased expression of CREM mRNA CTD PMID:19371601 NCBI chr17:54,238,889...54,305,989
Ensembl chr17:54,239,030...54,305,989 		JBrowse link
G Cytip cytohesin 1 interacting protein increases expression ISO ammonium hexachloroplatinate results in increased expression of CYTIP mRNA CTD PMID:19371601 NCBI chr 3:42,698,058...42,774,955
Ensembl chr 3:42,698,768...42,725,993 		JBrowse link
G Dhx29 DExH-box helicase 29 affects expression ISO ammonium hexachloroplatinate affects the expression of DHX29 mRNA CTD PMID:19527780 NCBI chr 2:44,560,653...44,611,450
Ensembl chr 2:44,560,714...44,611,445 		JBrowse link
G Fth1 ferritin heavy chain 1 increases expression ISO ammonium hexachloroplatinate results in increased expression of FTH1 mRNA CTD PMID:24211530 NCBI chr 1:206,627,142...206,629,430
Ensembl chr 1:206,627,103...206,725,424 		JBrowse link
G Ftl1 ferritin light chain 1 increases expression ISO ammonium hexachloroplatinate results in increased expression of FTL mRNA CTD PMID:24211530 NCBI chr 1:95,936,387...95,938,234
Ensembl chr 1:95,936,387...95,939,725
Ensembl chr10:95,936,387...95,939,725 		JBrowse link
G Gclm glutamate cysteine ligase, modifier subunit increases expression ISO ammonium hexachloroplatinate results in increased expression of GCLM mRNA CTD PMID:24211530 NCBI chr 2:210,347,482...210,367,537
Ensembl chr 2:210,347,482...210,367,535 		JBrowse link
G Gnrhr gonadotropin releasing hormone receptor affects expression ISO ammonium hexachloroplatinate affects the expression of GNRHR mRNA CTD PMID:19527780 NCBI chr14:21,856,871...21,874,861
Ensembl chr14:21,856,871...21,874,861 		JBrowse link
G Hmox1 heme oxygenase 1 increases expression ISO ammonium hexachloroplatinate results in increased expression of HMOX1 mRNA CTD PMID:24211530 NCBI chr19:13,466,287...13,474,082
Ensembl chr19:13,467,244...13,474,079 		JBrowse link
G Hspa6l-ps1 heat shock protein family A (Hsp70) member 6 like, pseudogene 1 affects expression ISO ammonium hexachloroplatinate affects the expression of HSPA6 mRNA CTD PMID:19110044 NCBI chr13:83,273,176...83,274,317 JBrowse link
G Kitlg KIT ligand affects expression ISO ammonium hexachloroplatinate affects the expression of KITLG mRNA CTD PMID:19110044 NCBI chr 7:34,896,075...34,977,215
Ensembl chr 7:34,896,053...34,977,214 		JBrowse link
G Ldha lactate dehydrogenase A affects expression ISO ammonium hexachloroplatinate affects the expression of LDHA mRNA CTD PMID:19110044 NCBI chr 1:97,371,823...97,381,247
Ensembl chr 1:97,366,021...97,433,472 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor increases expression ISO ammonium hexachloroplatinate results in increased expression of MYC mRNA CTD PMID:24211530 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630 		JBrowse link
G Nampt nicotinamide phosphoribosyltransferase increases expression ISO ammonium hexachloroplatinate results in increased expression of NAMPT mRNA CTD PMID:19371601 NCBI chr 6:49,425,316...49,462,109
Ensembl chr 6:49,424,332...49,462,100 		JBrowse link
G Nexn nexilin (F actin binding protein) affects expression ISO ammonium hexachloroplatinate affects the expression of NEXN mRNA CTD PMID:19527780 NCBI chr 2:241,186,783...241,218,315
Ensembl chr 2:241,186,790...241,218,342 		JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 affects expression ISO ammonium hexachloroplatinate affects the expression of NFKB1 mRNA CTD PMID:20385217 NCBI chr 2:224,016,214...224,132,135
Ensembl chr 2:224,016,214...224,110,404 		JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 increases expression ISO ammonium hexachloroplatinate results in increased expression of NQO1 mRNA CTD PMID:24211530 NCBI chr19:35,295,633...35,310,528
Ensembl chr19:35,295,573...35,310,557 		JBrowse link
G Olr1433 olfactory receptor 1433 affects expression ISO ammonium hexachloroplatinate affects the expression of OR2W3 mRNA CTD PMID:19527780 NCBI chr10:43,042,427...43,046,293
Ensembl chr10:43,037,857...43,046,701 		JBrowse link
G Osbp2 oxysterol binding protein 2 affects expression ISO ammonium hexachloroplatinate affects the expression of OSBP2 mRNA CTD PMID:19527780 NCBI chr14:78,585,088...78,746,785
Ensembl chr14:78,585,089...78,746,786 		JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 increases expression ISO ammonium hexachloroplatinate results in increased expression of PTGS2 mRNA CTD PMID:19371601 NCBI chr13:62,163,936...62,172,193
Ensembl chr13:62,163,932...62,172,188 		JBrowse link
G Sel1l3 SEL1L family member 3 increases expression ISO ammonium hexachloroplatinate results in increased expression of SEL1L3 mRNA CTD PMID:24211530 NCBI chr14:57,775,515...57,882,076
Ensembl chr14:57,775,501...57,882,644 		JBrowse link
G Slc16a4 solute carrier family 16, member 4 affects expression ISO ammonium hexachloroplatinate affects the expression of SLC16A4 mRNA CTD PMID:19110044 NCBI chr 2:194,911,075...194,933,162
Ensembl chr 2:194,911,236...194,933,117 		JBrowse link
G Slc7a11 solute carrier family 7 member 11 increases expression ISO ammonium hexachloroplatinate results in increased expression of SLC7A11 mRNA CTD PMID:24211530 NCBI chr 2:134,382,002...134,517,622
Ensembl chr 2:133,963,107...134,517,536 		JBrowse link
G Socs3 suppressor of cytokine signaling 3 affects expression ISO ammonium hexachloroplatinate affects the expression of SOCS3 mRNA CTD PMID:19110044 NCBI chr10:103,193,909...103,197,322
Ensembl chr10:103,193,537...103,197,787 		JBrowse link
G Sqstm1 sequestosome 1 increases expression ISO ammonium hexachloroplatinate results in increased expression of SQSTM1 mRNA CTD PMID:24211530 NCBI chr10:34,525,517...34,536,670
Ensembl chr10:34,525,519...34,536,673 		JBrowse link
G Stc1 stanniocalcin 1 affects expression ISO ammonium hexachloroplatinate affects the expression of STC1 mRNA CTD PMID:19527780 NCBI chr15:44,299,591...44,311,695
Ensembl chr15:44,299,621...44,310,264 		JBrowse link
G Syne2 spectrin repeat containing nuclear envelope protein 2 decreases expression ISO ammonium hexachloroplatinate results in decreased expression of SYNE2 mRNA CTD PMID:24211530 NCBI chr 6:94,537,088...94,848,085
Ensembl chr 6:94,537,088...94,848,064 		JBrowse link
G Tlr2 toll-like receptor 2 affects expression ISO ammonium hexachloroplatinate affects the expression of TLR2 mRNA CTD PMID:19110044 NCBI chr 2:169,200,620...169,206,819
Ensembl chr 2:169,197,419...169,206,630 		JBrowse link
G Tnf tumor necrosis factor affects expression ISO ammonium hexachloroplatinate affects the expression of TNF mRNA CTD PMID:20385217 NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629 		JBrowse link
G Tnnt2 troponin T2, cardiac type decreases expression ISO ammonium hexachloroplatinate results in decreased expression of TNNT2 mRNA CTD PMID:24211530 NCBI chr13:47,267,325...47,285,390
Ensembl chr13:47,267,204...47,285,388 		JBrowse link
G Txnrd1 thioredoxin reductase 1 increases expression ISO ammonium hexachloroplatinate results in increased expression of TXNRD1 mRNA CTD PMID:24211530 NCBI chr 7:20,830,042...20,914,990
Ensembl chr 7:20,830,045...20,907,863 		JBrowse link
G Uba2 ubiquitin-like modifier activating enzyme 2 affects expression ISO ammonium hexachloroplatinate affects the expression of UBA2 mRNA CTD PMID:19527780 NCBI chr 1:86,775,239...86,802,685
Ensembl chr 1:86,775,244...86,802,682 		JBrowse link
sodium hexachloroplatinate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il2 interleukin 2 increases expression ISO disodium hexachloroplatinate results in increased expression of IL2 protein CTD PMID:22381623 NCBI chr 2:120,004,862...120,009,566
Ensembl chr 2:120,004,862...120,009,566 		JBrowse link
G Il4 interleukin 4 increases expression ISO disodium hexachloroplatinate results in increased expression of IL4 protein CTD PMID:22381623 NCBI chr10:37,771,203...37,776,750
Ensembl chr10:37,771,203...37,776,750 		JBrowse link
G Il4r interleukin 4 receptor increases expression ISO disodium hexachloroplatinate results in increased expression of IL4RA protein CTD PMID:22381623 NCBI chr 1:180,115,061...180,139,981
Ensembl chr 1:180,115,120...180,139,980 		JBrowse link
tetrachloropalladate(2-) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tlr4 toll-like receptor 4 multiple interactions ISO TLR4 protein affects the reaction [tetrachloropalladium results in increased secretion of CXCL8 protein] CTD PMID:23692033 NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628 		JBrowse link
trifluoroberyllate(1-) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxp pyridoxal phosphatase decreases activity ISO beryllium trifluoride results in decreased activity of PDXP protein CTD PMID:24338473 NCBI chr 7:110,472,515...110,477,963
Ensembl chr 7:110,472,515...110,477,963 		JBrowse link
G Pgp phosphoglycolate phosphatase decreases activity ISO beryllium trifluoride results in decreased activity of PGP protein CTD PMID:24338473 NCBI chr10:13,495,232...13,497,858
Ensembl chr10:13,494,291...13,497,858 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19898
    chemical entity 19896
      molecular entity 19896
        polyatomic entity 19848
          heteroatomic molecular entity 19806
            coordination entity 15555
              halometallate anion 43
                bromometallate anion + 0
                chlorometallate anion + 41
                fluorometallate anion + 2
                halometallate salt + 0
                halooxometallate anion + 0
                iodometallate anion + 0
                perhalometallate anion + 43
Path 2
Term Annotations click to browse term
  CHEBI ontology 19898
    subatomic particle 19896
      composite particle 19896
        hadron 19896
          baryon 19896
            nucleon 19896
              atomic nucleus 19896
                atom 19896
                  group 19849
                    polyatomic entity 19848
                      heteroatomic molecular entity 19806
                        coordination entity 15555
                          halometallate anion 43
                            bromometallate anion + 0
                            chlorometallate anion + 41
                            fluorometallate anion + 2
                            halometallate salt + 0
                            halooxometallate anion + 0
                            iodometallate anion + 0
                            perhalometallate anion + 43
paths to the root