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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:gallium atom
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Accession:CHEBI:49631 term browser browse the term
Definition:A metallic element predicted as eka-aluminium by Mendeleev in 1870 and discovered by Paul-Emile Lecoq de Boisbaudran in 1875. Named in honour of France (Latin Gallia) and perhaps also from the Latin gallus cock, a translation of Lecoq.
Synonyms:related_synonym: 31Ga;   Formula=Ga;   Ga;   InChI=1S/Ga;   InChIKey=GYHNNYVSQQEPJS-UHFFFAOYSA-N;   SMILES=[Ga];   galio;   gallium
 alt_id: CHEBI:33326;   CHEBI:49630
 xref: CAS:7440-55-3
 xref_mesh: MESH:D005708
 xref: WebElements:Ga


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gallium atom term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp3 caspase 3 increases activity ISO Gallium results in increased activity of CASP3 protein CTD PMID:21194614 NCBI chr16:45,662,910...45,681,171
Ensembl chr16:45,662,910...45,684,648 		JBrowse link
G Casp8 caspase 8 increases activity ISO Gallium results in increased activity of CASP8 protein CTD PMID:21194614 NCBI chr 9:60,263,863...60,312,542
Ensembl chr 9:60,264,075...60,312,542 		JBrowse link
G Tf transferrin affects binding
multiple interactions
increases uptake		 ISO
EXP		 [TF protein binds to Gallium] which binds to TFRC protein; Gallium analog binds to TF protein
TFRC protein affects the uptake of [Gallium binds to TF protein]
TF protein results in increased uptake of Gallium		 CTD PMID:9630424 PMID:16938349 PMID:16988841 NCBI chr 8:103,789,780...103,816,487
Ensembl chr 8:103,767,995...103,816,511 		JBrowse link
G Tfrc transferrin receptor affects binding
multiple interactions
affects uptake		 ISO
EXP		 [TF protein binds to Gallium] which binds to TFRC protein
TFRC protein affects the uptake of [Gallium binds to TF protein]
TFRC protein affects the uptake of Gallium		 CTD PMID:9630424 PMID:16988841 NCBI chr11:68,163,413...68,185,257
Ensembl chr11:68,163,413...68,185,257 		JBrowse link
gallium nitrate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb7 ATP binding cassette subfamily B member 7 decreases expression ISO gallium nitrate results in decreased expression of ABCB7 mRNA CTD PMID:18586083 NCBI chr  X:69,295,598...69,436,775
Ensembl chr  X:69,295,552...69,436,858 		JBrowse link
G Aco1 aconitase 1 increases expression ISO gallium nitrate results in increased expression of ACO1 mRNA CTD PMID:18586083 NCBI chr 5:55,259,841...55,315,872
Ensembl chr 5:55,259,827...55,316,391 		JBrowse link
G Alb albumin multiple interactions EXP gallium nitrate inhibits the reaction [Tamoxifen results in decreased expression of ALB protein] CTD PMID:16837906 NCBI chr14:17,607,397...17,622,814
Ensembl chr14:17,607,381...17,622,836 		JBrowse link
G B2m beta-2 microglobulin decreases expression ISO gallium nitrate results in decreased expression of B2M mRNA CTD PMID:18586083 NCBI chr 3:109,095,740...109,101,764
Ensembl chr 3:109,095,729...109,101,766 		JBrowse link
G Bax BCL2 associated X, apoptosis regulator increases expression ISO gallium nitrate results in increased expression of BAX protein CTD PMID:17121930 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368 		JBrowse link
G Calr calreticulin decreases expression ISO gallium nitrate results in decreased expression of CALR mRNA CTD PMID:18586083 NCBI chr19:23,308,525...23,313,420
Ensembl chr19:23,308,351...23,313,414 		JBrowse link
G Casp3 caspase 3 increases activity
multiple interactions		 ISO gallium nitrate results in increased activity of CASP3 protein
Bortezomib promotes the reaction [gallium nitrate results in increased activity of CASP3 protein]		 CTD PMID:17121930 NCBI chr16:45,662,910...45,681,171
Ensembl chr16:45,662,910...45,684,648 		JBrowse link
G Cat catalase decreases expression ISO gallium nitrate results in decreased expression of CAT mRNA CTD PMID:18586083 NCBI chr 3:89,842,393...89,874,577
Ensembl chr 3:89,842,399...89,874,478 		JBrowse link
G Dnaja1 DnaJ heat shock protein family (Hsp40) member A1 increases expression ISO gallium nitrate results in increased expression of DNAJA1 mRNA CTD PMID:18586083 NCBI chr 5:55,842,414...55,853,326
Ensembl chr 5:55,842,426...55,853,967 		JBrowse link
G Egr1 early growth response 1 increases expression ISO gallium nitrate results in increased expression of EGR1 mRNA CTD PMID:18586083 NCBI chr18:26,462,967...26,466,766
Ensembl chr18:26,462,981...26,466,766 		JBrowse link
G Ftl1 ferritin light chain 1 increases expression ISO gallium nitrate results in increased expression of FTL mRNA CTD PMID:18586083 NCBI chr 1:95,936,387...95,938,234
Ensembl chr 1:95,936,387...95,939,725
Ensembl chr10:95,936,387...95,939,725
Ensembl chr 2:95,936,387...95,939,725 		JBrowse link
G Gpx4 glutathione peroxidase 4 decreases expression ISO gallium nitrate results in decreased expression of GPX4 mRNA CTD PMID:18586083 NCBI chr 7:9,650,186...9,652,982
Ensembl chr 7:9,650,185...9,652,982 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha decreases expression ISO gallium nitrate results in decreased expression of HIF1A mRNA CTD PMID:18586083 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Hmox1 heme oxygenase 1 increases expression
multiple interactions		 ISO gallium nitrate results in increased expression of HMOX1 mRNA; gallium nitrate results in increased expression of HMOX1 protein
Acetylcysteine inhibits the reaction [gallium nitrate results in increased expression of HMOX1 mRNA]; SB 203580 inhibits the reaction [gallium nitrate results in increased expression of HMOX1 protein]		 CTD PMID:18586083 NCBI chr19:13,466,287...13,474,082
Ensembl chr19:13,467,244...13,474,079 		JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 decreases expression ISO gallium nitrate results in decreased expression of HSPA5 mRNA CTD PMID:18586083 NCBI chr 3:18,055,507...18,059,969
Ensembl chr 3:18,055,405...18,059,891 		JBrowse link
G Hspa9 heat shock protein family A (Hsp70) member 9 decreases expression ISO gallium nitrate results in decreased expression of HSPA9 mRNA CTD PMID:18586083 NCBI chr18:26,536,131...26,554,294
Ensembl chr18:26,535,798...26,554,292 		JBrowse link
G Hspb1 heat shock protein family B (small) member 1 decreases expression ISO gallium nitrate results in decreased expression of HSPB1 mRNA CTD PMID:18586083 NCBI chr12:20,794,014...20,795,675
Ensembl chr12:20,794,028...20,795,743 		JBrowse link
G Hspd1 heat shock protein family D (Hsp60) member 1 decreases expression ISO gallium nitrate results in decreased expression of HSPD1 mRNA CTD PMID:18586083 NCBI chr 9:56,579,195...56,590,011
Ensembl chr 9:56,579,201...56,589,662 		JBrowse link
G Mt2A metallothionein 2A multiple interactions
increases expression		 ISO Acetylcysteine inhibits the reaction [gallium nitrate results in increased expression of MT2A mRNA]
gallium nitrate results in increased expression of MT2A mRNA; gallium nitrate results in increased expression of MT2A protein		 CTD PMID:18586083 NCBI chr19:10,832,009...10,832,783
Ensembl chr19:10,832,002...10,832,784 		JBrowse link
G Mt3 metallothionein 3 increases expression ISO gallium nitrate results in increased expression of MT3 mRNA CTD PMID:18586083 NCBI chr19:10,848,754...10,850,158
Ensembl chr19:10,848,755...10,850,158 		JBrowse link
G Mtf1 metal-regulatory transcription factor 1 increases expression ISO gallium nitrate results in increased expression of MTF1 mRNA CTD PMID:18586083 NCBI chr 5:137,062,319...137,107,136
Ensembl chr 5:137,062,376...137,107,136 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor decreases expression ISO gallium nitrate results in decreased expression of MYC mRNA CTD PMID:18586083 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630 		JBrowse link
G Nfe2l2 NFE2 like bZIP transcription factor 2 multiple interactions
increases activity		 ISO SB 203580 inhibits the reaction [gallium nitrate results in increased activity of NFE2L2 protein] CTD PMID:18586083 NCBI chr 3:60,594,239...60,621,712
Ensembl chr 3:60,594,242...60,621,737 		JBrowse link
G Popdc2 popeye domain cAMP effector 2 decreases expression ISO gallium nitrate results in decreased expression of POPDC2 mRNA CTD PMID:18586083 NCBI chr11:62,351,843...62,398,688
Ensembl chr11:62,374,759...62,390,756 		JBrowse link
G Prdx4 peroxiredoxin 4 decreases expression ISO gallium nitrate results in decreased expression of PRDX4 mRNA CTD PMID:18586083 NCBI chr  X:40,026,762...40,044,066
Ensembl chr  X:40,026,651...40,044,066 		JBrowse link
G Pth parathyroid hormone multiple interactions EXP gallium nitrate inhibits the reaction [Tamoxifen results in decreased expression of PTH protein] CTD PMID:16837906 NCBI chr 1:167,508,121...167,511,530
Ensembl chr 1:167,508,598...167,511,530 		JBrowse link
G Slc39a6 solute carrier family 39 member 6 decreases expression ISO gallium nitrate results in decreased expression of SLC39A6 mRNA CTD PMID:18586083 NCBI chr18:15,864,874...15,885,417
Ensembl chr18:15,864,875...15,885,417 		JBrowse link
G Slc40a1 solute carrier family 40 member 1 decreases expression ISO gallium nitrate results in decreased expression of SLC40A1 mRNA CTD PMID:18586083 NCBI chr 9:48,033,526...48,053,876
Ensembl chr 9:48,033,526...48,051,481 		JBrowse link
G Sod1 superoxide dismutase 1 decreases expression ISO gallium nitrate results in decreased expression of SOD1 mRNA CTD PMID:18586083 NCBI chr11:29,456,673...29,462,249
Ensembl chr11:29,456,558...29,462,249 		JBrowse link
G Sod2 superoxide dismutase 2 decreases expression ISO gallium nitrate results in decreased expression of SOD2 mRNA CTD PMID:18586083 NCBI chr 1:47,638,318...47,645,163
Ensembl chr 1:47,636,528...47,645,189 		JBrowse link
G Tf transferrin multiple interactions ISO gallium nitrate promotes the reaction [TF protein results in increased uptake of Iron] CTD PMID:11335103 NCBI chr 8:103,789,780...103,816,487
Ensembl chr 8:103,767,995...103,816,511 		JBrowse link
G Tfrc transferrin receptor decreases expression ISO gallium nitrate results in decreased expression of TFRC mRNA CTD PMID:18586083 NCBI chr11:68,163,413...68,185,257
Ensembl chr11:68,163,413...68,185,257 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19901
    chemical entity 19899
      atom 19899
        main group element atom 19838
          p-block element atom 19838
            boron group element atom 1142
              gallium atom 33
                gallium molecular entity + 32
Path 2
Term Annotations click to browse term
  CHEBI ontology 19901
    subatomic particle 19899
      composite particle 19899
        hadron 19899
          baryon 19899
            nucleon 19899
              atomic nucleus 19899
                atom 19899
                  main group element atom 19838
                    p-block element atom 19838
                      boron group element atom 1142
                        gallium atom 33
                          gallium molecular entity + 32
paths to the root