Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:beryllium difluoride
go back to main search page
Accession:CHEBI:49499 term browser browse the term
Definition:The fluoride salt of beryllium (+2 oxidation state). In the solid state it exists as a glass, with four-coordinate Be(2+) tetrahedral centres and two-coordinate fluoride centres. As a gas it adopts a linear triatomic structure and in the liquid state a fluctuating tetrahedral structure. In protein crystallography it is used as a mimic of phosphate.
Synonyms:related_synonym: Be2F4;   BeF2;   Beryllium fluoride;   Berylliumfluorid;   Formula=BeF2;   InChI=1S/Be.2FH/h;2*1H/q+2;;/p-2;   InChIKey=JZKFIPKXQBZXMW-UHFFFAOYSA-L;   SMILES=F[Be]F
 xref: CAS:7787-49-7;   Gmelin:95146
 xref_mesh: MESH:C035982
 xref: MetaCyc:CPD0-1230;   PMID:11897645;   PMID:1551879;   PMID:16223284;   PMID:16771419;   PMID:16771420;   PMID:17963376;   PMID:17979355;   PMID:18651739;   PMID:19561071;   PMID:20529842;   PMID:20572721;   PMID:21141831;   PMID:2808407;   PMID:8800204;   Reaxys:14667390



show annotations for term's descendants           Sort by:
beryllium difluoride term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCB1 ATP binding cassette subfamily B member 1 multiple interactions EXP beryllium fluoride promotes the reaction [ABCB1 protein mutant form binds to 8-azidoadenosine 5'-triphosphate] CTD PMID:11027628 NCBI chr 7:87,503,017...87,713,295
Ensembl chr 7:87,503,017...87,713,323
JBrowse link
G ABCC6 ATP binding cassette subfamily C member 6 multiple interactions ISO beryllium fluoride promotes the reaction [8-azidoadenosine 5'-triphosphate binds to ABCC6 protein]; Cobalt promotes the reaction [beryllium fluoride promotes the reaction [8-azidoadenosine 5'-triphosphate binds to ABCC6 protein]]; Magnesium Chloride promotes the reaction [beryllium fluoride promotes the reaction [8-azidoadenosine 5'-triphosphate binds to ABCC6 protein]]; Manganese promotes the reaction [beryllium fluoride promotes the reaction [8-azidoadenosine 5'-triphosphate binds to ABCC6 protein]]; Nickel promotes the reaction [beryllium fluoride promotes the reaction [8-azidoadenosine 5'-triphosphate binds to ABCC6 protein]] CTD PMID:12069597 NCBI chr16:16,149,565...16,223,494
Ensembl chr16:16,149,565...16,223,522
JBrowse link
G ABCC8 ATP binding cassette subfamily C member 8 decreases activity EXP
ISO
beryllium fluoride results in decreased activity of ABCC8 protein CTD PMID:17561960 PMID:18025464 NCBI chr11:17,392,498...17,476,845
Ensembl chr11:17,392,498...17,476,894
JBrowse link
G CREB1 cAMP responsive element binding protein 1 increases expression ISO beryllium fluoride results in increased expression of CREB1 protein CTD PMID:11867686 NCBI chr 2:207,529,962...207,605,988
Ensembl chr 2:207,529,737...207,605,988
JBrowse link
G FOS Fos proto-oncogene, AP-1 transcription factor subunit increases expression ISO beryllium fluoride results in increased expression of FOS protein CTD PMID:11867686 NCBI chr14:75,278,828...75,282,230
Ensembl chr14:75,278,826...75,283,190
JBrowse link
G MAP2K1 mitogen-activated protein kinase kinase 1 increases phosphorylation ISO beryllium fluoride results in increased phosphorylation of MAP2K1 protein CTD PMID:11867686 NCBI chr15:66,386,912...66,491,544
Ensembl chr15:66,386,837...66,491,656
JBrowse link
G MAPK3 mitogen-activated protein kinase 3 increases phosphorylation ISO beryllium fluoride results in increased phosphorylation of MAPK3 protein CTD PMID:11867686 NCBI chr16:30,114,105...30,123,220
Ensembl chr16:30,114,105...30,123,506
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor increases expression ISO beryllium fluoride results in increased expression of MYC protein CTD PMID:11867686 NCBI chr 8:127,735,434...127,742,951
Ensembl chr 8:127,735,434...127,742,951
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 26505
    role 26328
      biological role 26307
        epitope 7438
          beryllium atom 108
            beryllium molecular entity 108
              beryllium difluoride 8
Path 2
Term Annotations click to browse term
  CHEBI ontology 26505
    subatomic particle 26481
      composite particle 26481
        hadron 26481
          baryon 26481
            nucleon 26481
              atomic nucleus 26481
                atom 26481
                  main group element atom 26220
                    p-block element atom 26220
                      halogen 21328
                        halogen molecular entity 21328
                          halide 21186
                            halide salt 9868
                              fluoride salt 2114
                                beryllium difluoride 8
paths to the root