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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:beryllium coordination entity
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Accession:CHEBI:33782 term browser browse the term
Synonyms:related_synonym: beryllium coordination compounds;   beryllium coordination entities



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beryllium dihydride term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn2a cyclin-dependent kinase inhibitor 2A multiple interactions EXP [Beryllium results in increased methylation of CDKN2A promoter] which results in decreased expression of CDKN2A mRNA CTD PMID:11872642 NCBI chr 5:109,100,763...109,114,448 JBrowse link
G Esr1 estrogen receptor 1 increases methylation EXP Beryllium results in increased methylation of ESR1 gene CTD PMID:11872642 NCBI chr 1:43,511,685...43,904,454 JBrowse link
G Hras HRas proto-oncogene, GTPase increases mutagenesis EXP Beryllium results in increased mutagenesis of HRAS gene CTD PMID:7545909 NCBI chr 1:205,712,625...205,729,406 JBrowse link
G Il1b interleukin 1 beta increases expression
affects expression
ISO Beryllium results in increased expression of IL1B mRNA
Beryllium affects the expression of IL1B mRNA
CTD PMID:8473757 PMID:8629860 NCBI chr 3:137,030,200...137,036,581 JBrowse link
G RT1-Hb-ps1 RT1 class II, locus Hb, pseudogene 1 affects binding
increases response to substance
ISO HLA-DPB1 protein mutant form binds to Beryllium
HLA-DPB1 gene polymorphism results in increased susceptibility to Beryllium; HLA-DPB1 gene SNP results in increased susceptibility to Beryllium; HLA-DPB1 protein mutant form results in increased susceptibility to Beryllium
CTD PMID:11551429 PMID:15273960 PMID:17956852 NCBI chr20:4,775,598...4,779,590 JBrowse link
G Tnf tumor necrosis factor increases expression
increases secretion
increases response to substance
ISO Beryllium results in increased expression of TNF mRNA
Beryllium results in increased secretion of TNF protein
TNF promoter polymorphism results in increased susceptibility to Beryllium
CTD PMID:8629860 PMID:12449171 PMID:15127972 NCBI chr20:3,626,685...3,629,303 JBrowse link
trifluoroberyllate(1-) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxp pyridoxal phosphatase decreases activity ISO beryllium trifluoride results in decreased activity of PDXP protein CTD PMID:24338473 NCBI chr 7:110,472,515...110,477,963 JBrowse link
G Pgp phosphoglycolate phosphatase decreases activity ISO beryllium trifluoride results in decreased activity of PGP protein CTD PMID:24338473 NCBI chr10:13,999,782...14,002,408 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19898
    role 19869
      biological role 19867
        epitope 7038
          beryllium atom 86
            beryllium molecular entity 86
              beryllium coordination entity 8
                beryllium hydride + 6
                tetraaquaberyllium(2+) 0
                tetrafluoroberyllate(2-) 0
                tetrahydroxoberyllate(2-) 0
                trifluoroberyllate(1-) 2
Path 2
Term Annotations click to browse term
  CHEBI ontology 19898
    subatomic particle 19896
      composite particle 19896
        hadron 19896
          baryon 19896
            nucleon 19896
              atomic nucleus 19896
                atom 19896
                  group 19848
                    polyatomic entity 19847
                      heteroatomic molecular entity 19805
                        coordination entity 15560
                          main-group coordination entity 2780
                            alkaline earth coordination entity 26
                              beryllium coordination entity 8
                                beryllium hydride + 6
                                tetraaquaberyllium(2+) 0
                                tetrafluoroberyllate(2-) 0
                                tetrahydroxoberyllate(2-) 0
                                trifluoroberyllate(1-) 2
paths to the root