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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:all-trans-neoxanthin
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Accession:CHEBI:32446 term browser browse the term
Definition:A neoxanthin in which all of the double bonds have trans geometry.
Synonyms:exact_synonym: (3S,3'S,5R,5'R,6R,6'S,8R)-6,7-didehydro-5,5',6,6'-tetrahydro-5',6'-epoxy-beta,beta-carotene-3,3',5-triol;   (3S,5R,6R,3'S,5'R,6'S)-6,7-didehydro-5',6'-epoxy-5,6,5',6'-tetrahydro-beta,beta-carotene-3,5,3'-triol
 related_synonym: Formula=C40H56O4;   InChI=1S/C40H56O4/c1-29(17-13-19-31(3)21-22-35-36(5,6)25-33(41)27-38(35,9)43)15-11-12-16-30(2)18-14-20-32(4)23-24-40-37(7,8)26-34(42)28-39(40,10)44-40/h11-21,23-24,33-34,41-43H,25-28H2,1-10H3/b12-11+,17-13+,18-14+,24-23+,29-15+,30-16+,31-19+,32-20+/t22-,33-,34-,38+,39+,40-/m0/s1;   InChIKey=PGYAYSRVSAJXTE-MTYISEJWSA-N;   Neoxanthin;   SMILES=[C@](=C(\\C(=C\\C=C\\C(=C\\C=C\\C=C(\\C=C\\C=C(\\C=C\\[C@@]12[C@@](C[C@H](CC1(C)C)O)(O2)C)/C)/C)\\C)\\C)[H])=C3C(C[C@H](O)C[C@@]3(C)O)(C)C
 alt_id: CHEBI:22344;   CHEBI:44249;   CHEBI:7517
 xref: Beilstein:101197;   CAS:14660-91-4;   COMe:MOL000106;   HMDB:HMDB0003020;   KEGG:C08606;   KEGG:C13431;   KNApSAcK:C00003780
 xref_mesh: MESH:C011947
 xref: MetaCyc:CPD1F-135;   PMID:11029576;   PMID:13706623;   PMID:15333710;   PMID:22502907;   PMID:8610051;   Reaxys:101197


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all-trans-neoxanthin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aifm1 apoptosis inducing factor, mitochondria associated 1 affects localization ISO neoxanthin affects the localization of AIFM1 protein CTD PMID:17186379 NCBI chr  X:127,650,223...127,689,356
Ensembl chr  X:127,650,226...127,689,256 		JBrowse link
G Casp3 caspase 3 multiple interactions ISO neoxanthin results in increased cleavage of and results in increased activity of CASP3 protein CTD PMID:17186379 NCBI chr16:45,662,910...45,681,171
Ensembl chr16:45,662,910...45,684,648 		JBrowse link
G Casp8 caspase 8 increases activity ISO neoxanthin results in increased activity of CASP8 protein CTD PMID:17186379 NCBI chr 9:60,263,863...60,312,542
Ensembl chr 9:60,264,075...60,312,542 		JBrowse link
G Casp9 caspase 9 multiple interactions ISO neoxanthin results in increased cleavage of and results in increased activity of CASP9 protein CTD PMID:17186379 NCBI chr 5:154,108,872...154,126,628
Ensembl chr 5:154,109,046...154,126,626 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19880
    role 19850
      biological role 19848
        biophysical role 14048
          biological pigment 1170
            all-trans-neoxanthin 4
Path 2
Term Annotations click to browse term
  CHEBI ontology 19880
    subatomic particle 19878
      composite particle 19878
        hadron 19878
          baryon 19878
            nucleon 19878
              atomic nucleus 19878
                atom 19878
                  main group element atom 19817
                    main group molecular entity 19817
                      s-block molecular entity 19653
                        hydrogen molecular entity 19634
                          hydrides 19144
                            organic hydride 18691
                              organic fundamental parent 18691
                                hydrocarbon 18442
                                  terpene 14066
                                    tetraterpene 599
                                      carotene 599
                                        carotenoid 599
                                          xanthophyll 274
                                            epoxycarotenoid 128
                                              epoxycarotenol 128
                                                neoxanthin 4
                                                  all-trans-neoxanthin 4
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