Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:ribitol
go back to main search page
Accession:CHEBI:15963 term browser browse the term
Definition:A pentitol (five-carbon sugar alcohol) having meso-configuration, being derived from ribose by reduction of the carbonyl group. It occurs naturally in the plant Adonis vernalis.
Synonyms:exact_synonym: meso-ribitol
 related_synonym: (2R,3s,4S)-pentane-1,2,3,4,5-pentol;   Adonitol;   D-Adonitol;   D-Ribitol;   Formula=C5H12O5;   InChI=1S/C5H12O5/c6-1-3(8)5(10)4(9)2-7/h3-10H,1-2H2/t3-,4+,5-;   InChIKey=HEBKCHPVOIAQTA-ZXFHETKHSA-N;   L-ribitol;   SMILES=OC[C@H](O)[C@H](O)[C@H](O)CO
 alt_id: CHEBI:15043;   CHEBI:21074;   CHEBI:26552;   CHEBI:27854;   CHEBI:4230;   CHEBI:48505;   CHEBI:57591;   CHEBI:8841
 xref: Beilstein:1720524;   CAS:488-81-3;   Gmelin:82894;   HMDB:HMDB0000508;   KEGG:C00474;   KNApSAcK:C00001171
 xref_mesh: MESH:D012255
 xref: MetaCyc:RIBITOL;   PMID:15234337;   PMID:16664320;   PMID:16901854;   PMID:17336832;   PMID:17979222;   PMID:23564164;   PMID:24643482;   PMID:25108762;   Reaxys:1720524;   Wikipedia:Ribitol


show annotations for term's descendants           Sort by:
ribitol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Taldo1 transaldolase 1 increases abundance ISO TALDO1 gene mutant form results in increased abundance of Ribitol CTD PMID:19436114 NCBI chr 1:196,493,634...196,503,965
Ensembl chr 1:196,493,589...196,503,974 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19911
    role 19854
      biological role 19852
        biochemical role 19582
          metabolite 19562
            eukaryotic metabolite 19390
              plant metabolite 18000
                ribitol 1
                  1-deoxy-1-[(5-nitro-2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)amino]-D-ribitol 0
                  1-deoxy-1-[(5-nitroso-2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)amino]-D-ribito 0
                  1-deoxy-1-\{[2,6-dihydroxy-5-(5-phosphonopentyl)pyrimidin-4-yl]amino\}-D-ribitol 0
                  1-deoxy-1-\{[2,6-dioxo-5-(5-phosphonopentyl)-1,2,3,6-tetrahydropyrimidin-4-yl]amino\}-D-ribitol 0
                  2-amino-6,7-dimethyl-4-oxo-8-(1'-D-ribityl)-4,8-dihydropteridine 0
                  5-amino-5-(4-hydroxybenzyl)-6-(D-ribitylimino)-5,6-dihydrouracil 0
                  5-amino-6-(D-ribitylamino)uracil 0
                  6,7-dimethyl-8-(1-D-ribityl)lumazine 0
                  6-(hydroxymethyl)-8-(1-D-ribityl)lumazine 0
                  6-methyl-7-oxo-8-(1-D-ribityl)lumazine (2-hydroxy tautomer) 0
                  6-methyl-7-oxo-8-(1-D-ribityl)lumazine (2-oxo tautomer) 0
                  6-methyl-7-oxo-8-(1-D-ribityl)lumazine (2-oxo tautomer)(1-) 0
                  7-hydroxy-6-methyl-8-(1-D-ribityl)lumazine 0
                  8-(1,2-dideoxy-1-D-ribityl)-7-methyllumazine 0
                  8-(1,4-dideoxy-1-D-ribityl)-6-methyllumazine 0
                  8-(1,4-dideoxy-1-D-ribityl)-7-methyllumazine 0
                  8-(1,5-dideoxy-1-D-ribityl)-7-methyllumazine 0
                  8-(5-hydroxypentyl)-7-methyllumazine 0
                  D-ribitol 1-phosphate 0
                  D-ribitol 5-phosphate + 0
                  D-ribitol-(5-P-2)-alpha-D-Galp-(1->3)-alpha-D-Glcp 0
                  [3)-beta-D-ribosyl-(1->1)-D-ribitol-5-P-(O->]3 0
                  alpha-D-Galp-(1->3)-alpha-D-Glcp-(1->3)-alpha-L-Rhap-(1->3)-D-ribitol 0
                  alpha-D-Galp-(1->3)-alpha-D-Glcp-(1->3)-alpha-L-Rhap-(1->3)-D-ribitol-5-phosphate 0
                  alpha-D-Galp-(1->3)-alpha-D-Glcp-(1->3)-alpha-L-Rhap-(1->4)-D-ribitol 0
                  alpha-D-Galp-(1->3)-alpha-D-Glcp-(1->3)-alpha-L-Rhap-(1->4)-D-ribitol-5-phosphate 0
                  alpha-D-Glcp-(1->3)-alpha-D-Glcp-(1->3)-alpha-L-Rhap-(1->3)-D-ribitol 0
                  alpha-D-Glcp-(1->3)-alpha-D-Glcp-(1->3)-alpha-L-Rhap-(1->3)-D-ribitol-5-phosphate 0
                  alpha-D-Glcp-(1->3)-alpha-L-Rhap-(1->3)-D-ribitol 0
                  alpha-D-Glcp-(1->3)-alpha-L-Rhap-(1->4)-D-ribitol 0
                  alpha-L-Rhap-(1->3)-D-ribitol 0
                  alpha-L-Rhap-(1->4)-D-ribitol 0
                  alpha-L-Rhap-(1->4)-D-ribitol-(5-P-2)-alpha-D-Galp-(1->3)-alpha-D-Glcp 0
                  alpha-L-Rhap-(1->4)-D-ribitol-5-phosphate 0
                  beta-D-ribosyl-(1->1)-D-ribitol-5-phosphate + 0
                  reduced 6-(hydroxymethyl)-8-(1-D-ribityl)lumazine 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19911
    subatomic particle 19909
      composite particle 19909
        hadron 19880
          baryon 19880
            nucleon 19909
              atomic nucleus 19880
                atom 19909
                  main group element atom 19849
                    p-block element atom 19849
                      carbon group element atom 19766
                        carbon atom 19785
                          organic molecular entity 19785
                            heteroorganic entity 19541
                              organochalcogen compound 19301
                                organooxygen compound 19193
                                  carbohydrates and carbohydrate derivatives 15275
                                    carbohydrate 15302
                                      alditol 3298
                                        pentitol 54
                                          ribitol 1
                                            1-deoxy-1-[(5-nitro-2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)amino]-D-ribitol 0
                                            1-deoxy-1-[(5-nitroso-2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)amino]-D-ribito 0
                                            1-deoxy-1-\{[2,6-dihydroxy-5-(5-phosphonopentyl)pyrimidin-4-yl]amino\}-D-ribitol 0
                                            1-deoxy-1-\{[2,6-dioxo-5-(5-phosphonopentyl)-1,2,3,6-tetrahydropyrimidin-4-yl]amino\}-D-ribitol 0
                                            2-amino-6,7-dimethyl-4-oxo-8-(1'-D-ribityl)-4,8-dihydropteridine 0
                                            5-amino-5-(4-hydroxybenzyl)-6-(D-ribitylimino)-5,6-dihydrouracil 0
                                            5-amino-6-(D-ribitylamino)uracil 0
                                            6,7-dimethyl-8-(1-D-ribityl)lumazine 0
                                            6-(hydroxymethyl)-8-(1-D-ribityl)lumazine 0
                                            6-methyl-7-oxo-8-(1-D-ribityl)lumazine (2-hydroxy tautomer) 0
                                            6-methyl-7-oxo-8-(1-D-ribityl)lumazine (2-oxo tautomer) 0
                                            6-methyl-7-oxo-8-(1-D-ribityl)lumazine (2-oxo tautomer)(1-) 0
                                            7-hydroxy-6-methyl-8-(1-D-ribityl)lumazine 0
                                            8-(1,2-dideoxy-1-D-ribityl)-7-methyllumazine 0
                                            8-(1,4-dideoxy-1-D-ribityl)-6-methyllumazine 0
                                            8-(1,4-dideoxy-1-D-ribityl)-7-methyllumazine 0
                                            8-(1,5-dideoxy-1-D-ribityl)-7-methyllumazine 0
                                            8-(5-hydroxypentyl)-7-methyllumazine 0
                                            D-ribitol 1-phosphate 0
                                            D-ribitol 5-phosphate + 0
                                            D-ribitol-(5-P-2)-alpha-D-Galp-(1->3)-alpha-D-Glcp 0
                                            [3)-beta-D-ribosyl-(1->1)-D-ribitol-5-P-(O->]3 0
                                            alpha-D-Galp-(1->3)-alpha-D-Glcp-(1->3)-alpha-L-Rhap-(1->3)-D-ribitol 0
                                            alpha-D-Galp-(1->3)-alpha-D-Glcp-(1->3)-alpha-L-Rhap-(1->3)-D-ribitol-5-phosphate 0
                                            alpha-D-Galp-(1->3)-alpha-D-Glcp-(1->3)-alpha-L-Rhap-(1->4)-D-ribitol 0
                                            alpha-D-Galp-(1->3)-alpha-D-Glcp-(1->3)-alpha-L-Rhap-(1->4)-D-ribitol-5-phosphate 0
                                            alpha-D-Glcp-(1->3)-alpha-D-Glcp-(1->3)-alpha-L-Rhap-(1->3)-D-ribitol 0
                                            alpha-D-Glcp-(1->3)-alpha-D-Glcp-(1->3)-alpha-L-Rhap-(1->3)-D-ribitol-5-phosphate 0
                                            alpha-D-Glcp-(1->3)-alpha-L-Rhap-(1->3)-D-ribitol 0
                                            alpha-D-Glcp-(1->3)-alpha-L-Rhap-(1->4)-D-ribitol 0
                                            alpha-L-Rhap-(1->3)-D-ribitol 0
                                            alpha-L-Rhap-(1->4)-D-ribitol 0
                                            alpha-L-Rhap-(1->4)-D-ribitol-(5-P-2)-alpha-D-Galp-(1->3)-alpha-D-Glcp 0
                                            alpha-L-Rhap-(1->4)-D-ribitol-5-phosphate 0
                                            beta-D-ribosyl-(1->1)-D-ribitol-5-phosphate + 0
                                            reduced 6-(hydroxymethyl)-8-(1-D-ribityl)lumazine 0
paths to the root