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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:2'-deoxycytidine
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Accession:CHEBI:15698 term browser browse the term
Definition:A pyrimidine 2'-deoxyribonucleoside having cytosine as the nucleobase.
Synonyms:related_synonym: 4-amino-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]pyrimidin-2(1H)-one;   Deoxycytidine;   dC;   dCYD
 alt_id: CHEBI:19240;   CHEBI:41417;   CHEBI:41430;   CHEBI:41434;   CHEBI:41806;   CHEBI:4407
 xref: CAS:951-77-9;   DrugBank:DB02594;   Gmelin:1321747;   HMDB:HMDB0000014
 xref_mesh: MESH:D003841
 xref: Reaxys:87567;   kegg.compound:C00881;   metacyc.compound:DEOXYCYTIDINE;   pdb-ccd:DCZ;   pubmed:15778433;   wikipedia.en:Deoxycytidine
 chemrof_formula: C9H13N3O4
 chemrof_inchikey: CKTSBUTUHBMZGZ-SHYZEUOFSA-N
 chemrof_inchi: InChI=1S/C9H13N3O4/c10-7-1-2-12(9(15)11-7)8-3-5(14)6(4-13)16-8/h1-2,5-6,8,13-14H,3-4H2,(H2,10,11,15)/t5-,6+,8+/m0/s1
 chemrof_smiles: Nc1ccn([C@H]2C[C@H](O)[C@@H](CO)O2)c(=O)n1
 cyclic_relationship: has_functional_parent CHEBI:16040


show annotations for term's descendants           Sort by:
2'-deoxycytidine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp3 caspase 3 multiple interactions ISO Deoxycytidine inhibits the reaction [[9-deaza-9-(3-thienylmethyl)guanine co-treated with Deoxyguanosine] results in increased activity of CASP3 protein] CTD PMID:9297556 PMID:9403342 NCBI chr16:52,395,539...52,413,794
Ensembl chr16:52,395,540...52,413,732 		JBrowse link
G Dck deoxycytidine kinase affects binding ISO Deoxycytidine binds to DCK protein CTD PMID:17530837 NCBI chr14:19,589,298...19,610,326
Ensembl chr14:19,589,298...19,610,326 		JBrowse link
G Slc28a1 solute carrier family 28 member 1 increases transport ISO SLC28A1 protein results in increased transport of Deoxycytidine CTD PMID:10772724 NCBI chr 1:144,490,453...144,532,025
Ensembl chr 1:144,490,623...144,531,544 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 20874
    role 20844
      biological role 20831
        biochemical role 19888
          metabolite 19624
            eukaryotic metabolite 19368
              fungal metabolite 17788
                Saccharomyces cerevisiae metabolite 16899
                  2'-deoxycytidine 3
                    5-methyl-2'-deoxycytidine 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 20874
    subatomic particle 20883
      composite particle 20883
        hadron 20872
          baryon 20883
            nucleon 20872
              atomic nucleus 20883
                atom 20872
                  main group element atom 20796
                    p-block element atom 20796
                      carbon group element atom 20712
                        carbon atom 20706
                          organic molecular entity 20706
                            heteroorganic entity 20201
                              organochalcogen compound 19822
                                organooxygen compound 19713
                                  carbohydrates and carbohydrate derivatives 15263
                                    carbohydrate derivative 14522
                                      glycosyl compound 13128
                                        N-glycosyl compound 5000
                                          nucleoside 4662
                                            deoxyribonucleoside 2901
                                              2'-deoxyribonucleoside 2259
                                                pyrimidine 2'-deoxyribonucleoside 364
                                                  2'-deoxycytidine 3
                                                    5-methyl-2'-deoxycytidine 0
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