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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:2'-deoxycytidine
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Accession:CHEBI:15698 term browser browse the term
Definition:A pyrimidine 2'-deoxyribonucleoside having cytosine as the nucleobase.
Synonyms:related_synonym: 4-amino-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]pyrimidin-2(1H)-one;   Deoxycytidine;   Formula=C9H13N3O4;   InChI=1S/C9H13N3O4/c10-7-1-2-12(9(15)11-7)8-3-5(14)6(4-13)16-8/h1-2,5-6,8,13-14H,3-4H2,(H2,10,11,15)/t5-,6+,8+/m0/s1;   InChIKey=CKTSBUTUHBMZGZ-SHYZEUOFSA-N;   SMILES=Nc1ccn([C@H]2C[C@H](O)[C@@H](CO)O2)c(=O)n1;   dC;   dCYD
 alt_id: CHEBI:19240;   CHEBI:41417;   CHEBI:41430;   CHEBI:41806;   CHEBI:4407
 xref: Beilstein:87567;   CAS:951-77-9;   DrugBank:DB02594;   Gmelin:1321747;   HMDB:HMDB0000014;   KEGG:C00881
 xref_mesh: MESH:D003841
 xref: MetaCyc:DEOXYCYTIDINE;   PDBeChem:DCZ;   PMID:15778433;   Reaxys:87567;   Wikipedia:Deoxycytidine


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2'-deoxycytidine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp3 caspase 3 multiple interactions ISO Deoxycytidine inhibits the reaction [[9-deaza-9-(3-thienylmethyl)guanine co-treated with Deoxyguanosine] results in increased activity of CASP3 protein] CTD PMID:9297556 PMID:9403342 NCBI chr16:45,662,910...45,681,171
Ensembl chr16:45,662,910...45,684,648 		JBrowse link
G Dck deoxycytidine kinase affects binding ISO Deoxycytidine binds to DCK protein CTD PMID:17530837 NCBI chr14:19,305,218...19,326,247
Ensembl chr14:19,305,218...19,326,247 		JBrowse link
G Slc28a1 solute carrier family 28 member 1 increases transport ISO SLC28A1 protein results in increased transport of Deoxycytidine CTD PMID:10772724 NCBI chr 1:135,079,375...135,122,791
Ensembl chr 1:135,081,385...135,122,464 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19911
    role 19854
      biological role 19852
        biochemical role 19582
          metabolite 19562
            eukaryotic metabolite 19390
              fungal metabolite 17976
                Saccharomyces cerevisiae metabolite 17500
                  2'-deoxycytidine 3
                    5-methyl-2'-deoxycytidine 0
                    N-Benzoyl-2'-deoxycytidine 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19911
    subatomic particle 19909
      composite particle 19909
        hadron 19880
          baryon 19880
            nucleon 19909
              atomic nucleus 19880
                atom 19909
                  main group element atom 19849
                    p-block element atom 19849
                      carbon group element atom 19766
                        carbon atom 19785
                          organic molecular entity 19785
                            heteroorganic entity 19541
                              organochalcogen compound 19301
                                organooxygen compound 19193
                                  carbohydrates and carbohydrate derivatives 15275
                                    carbohydrate 15302
                                      carbohydrate derivative 14313
                                        glycosyl compound 13078
                                          N-glycosyl compound 5824
                                            nucleoside 5734
                                              deoxyribonucleoside 2892
                                                2'-deoxyribonucleoside 2248
                                                  pyrimidine 2'-deoxyribonucleoside 355
                                                    2'-deoxycytidine 3
                                                      5-methyl-2'-deoxycytidine 0
                                                      N-Benzoyl-2'-deoxycytidine 0
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