Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:heparin pentasaccharide
go back to main search page
Accession:CHEBI:139212 term browser browse the term
Definition:Any amino pentasaccharide obtained by either chemical or enzymatic cleavage of the polymeric glycosaminoglycan heparin.
Synonyms:related_synonym: heparin pentasaccharides


show annotations for term's descendants           Sort by:
fondaparinux term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G F10 coagulation factor X decreases activity EXP fondaparinux results in decreased activity of F10 protein CTD PMID:16084352 NCBI chr13:113,122,799...113,149,529
Ensembl chr13:113,122,799...113,149,529 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 26559
    chemical entity 26539
      atom 26535
        nonmetal atom 25820
          oxygen atom 25027
            oxygen molecular entity 25027
              organooxygen compound 24231
                carbohydrates and carbohydrate derivatives 16817
                  glycan 9173
                    oligosaccharide derivative 164
                      heparin oligosaccharide 1
                        heparin pentasaccharide 1
                          HP_dp05_0001 0
                          normethylfondaparinux + 1
Path 2
Term Annotations click to browse term
  CHEBI ontology 26559
    subatomic particle 26535
      composite particle 26535
        hadron 26535
          baryon 26535
            nucleon 26535
              atomic nucleus 26535
                atom 26535
                  main group element atom 26283
                    p-block element atom 26283
                      carbon group element atom 25735
                        carbon atom 25698
                          organic molecular entity 25698
                            heteroorganic entity 25036
                              organochalcogen compound 24633
                                organooxygen compound 24231
                                  carbohydrates and carbohydrate derivatives 16817
                                    carbohydrate 16817
                                      oligosaccharide 631
                                        oligosaccharide derivative 164
                                          heparin oligosaccharide 1
                                            heparin pentasaccharide 1
                                              HP_dp05_0001 0
                                              normethylfondaparinux + 1
paths to the root