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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:alpha-D-GalN-(1->4)-[alpha-LD-Hep-(1->2)-alpha-DD-Hep-(1->2)]-alpha-D-GalA-(1->3)-[alpha-LD-Hep-(1->7)]-alpha-LD-Hep6PEtn-(1->3)-[beta-D-Glc-(1->4)]-alpha-LD-Hep-(1->5)-[alpha-Kdo-(2->4)][beta-L-Arap4N-(1->8)]-alpha-Kdo
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Accession:CHEBI:136356 term browser browse the term
Definition:An oligosaccharide derivative that is a undecasaccharide derivative, the oligosaccharide portion of the Proteus penneri strain 13 lipopolysaccharide (LPS) core region. Structural variations can occur: the alpha-LD-Hep substituent linked (1->7) to alpha-LD-Hep6PEtn may be further substituted (1->7) by a beta-D-GalAN residue; if so, then the [alpha-LD-Hep-(1->2)-alpha-DD-Hep branch linked (1->2) to alpha-D-GalA may be absent.
Synonyms:exact_synonym: 4-amino-4-deoxy-beta-L-arabinopyranosyl-(1->8)-[2-amino-2-deoxy-alpha-D-galactopyranosyl-(1->4)-[L-glycero-alpha-D-manno-heptopyranosyl-(1->2)-D-glycero-alpha-D-manno-heptopyranosyl-(1->2)]-alpha-D-galactopyranuronosyl-(1->3)-[L-glycero-alpha-D-manno-heptopyranosyl-(1->7)]-6-O-[(2-aminoethoxy)(hydroxy)phosphoryl]-L-glycero-alpha-D-manno-heptopyranosyl-(1->3)-[beta-D-glucopyranosyl-(1->4)]-L-glycero-alpha-D-manno-heptopyranosyl-(1->5)]-[3-deoxy-alpha-D-manno-oct-2-ulopyranonosyl-(2->4)]-3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid
 related_synonym: Formula=C76H130N3O66P;   InChI=1S/C76H130N3O66P/c77-1-2-126-146(121,122)145-26(14-125-66-41(107)34(100)36(102)48(129-66)17(88)5-80)54-44(110)56(135-72-60(45(111)57(62(141-72)63(114)115)136-64-27(79)32(98)30(96)24(10-85)127-64)139-71-59(39(105)38(104)50(131-71)19(90)7-82)138-68-43(109)35(101)37(103)49(130-68)18(89)6-81)46(112)69(133-54)137-58-47(113)70(132-52(21(92)9-84)61(58)140-67-42(108)33(99)31(97)25(11-86)128-67)134-55-23(142-76(74(118)119)3-16(87)29(95)51(144-76)20(91)8-83)4-75(120,73(116)117)143-53(55)22(93)13-124-65-40(106)28(94)15(78)12-123-65/h15-62,64-72,80-113,120H,1-14,77-79H2,(H,114,115)(H,116,117)(H,118,119)(H,121,122)/t15-,16+,17-,18-,19+,20+,21-,22+,23+,24+,25+,26-,27+,28-,29+,30-,31+,32+,33-,34-,35-,36-,37-,38-,39-,40+,41-,42+,43-,44+,45-,46-,47-,48+,49+,50+,51+,52+,53+,54+,55+,56-,57+,58+,59-,60+,61+,62-,64+,65+,66-,67-,68+,69+,70+,71+,72-,75+,76+/m0/s1;   InChIKey=MXRHIKHPVZCUQI-PUKPJFHPSA-N;   P. Penneri 13 LPS core oligosaccharide;   SMILES=O[C@@H]1[C@H]([C@H](O[C@@H]([C@@H]1O[C@@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O)N)C(O)=O)O[C@@H]3[C@H](O)[C@H](O[C@@]([C@H]3O)([C@@H](OP(=O)(OCCN)O)CO[C@H]4O[C@@]([C@H]([C@@H]([C@@H]4O)O)O)([C@@H](O)CO)[H])[H])O[C@@H]5[C@H](O)[C@H](O[C@@]([C@H]5O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O)O)O)([C@@H](O)CO)[H])O[C@@H]7[C@@H](C[C@@](O[C@@]7([C@H](O)CO[C@@H]8[C@@H]([C@H]([C@H](CO8)N)O)O)[H])(C(=O)O)O)O[C@@]9(C[C@H]([C@H]([C@](O9)([C@H](O)CO)[H])O)O)C(O)=O)O[C@H]%10O[C@@]([C@H]([C@@H]([C@@H]%10O[C@H]%11O[C@@]([C@H]([C@@H]([C@@H]%11O)O)O)([C@@H](O)CO)[H])O)O)([C@H](O)CO)[H];   alpha-D-GalpN-(1->4)-[alpha-LD-Hepp-(1->2)-alpha-DD-Hepp-(1->2)]-alpha-D-GalpA-(1->3)-[alpha-LD-Hepp-(1->7)]-alpha-LD-Hepp6PEtn-(1->3)-[beta-D-Glcp-(1->4)]-alpha-LD-Hepp-(1->5)-[alpha-Kdo-(2->4)][beta-L-Arap4N-(1->8)]-alpha-Kdo;   alpha-GalN-(1->4)-[alpha-Hep-(1->2)-alpha-DD-Hep-(1->2)]-alpha-GalA-(1->3)-[alpha-Hep-(1->7)]-alpha-Hep6PEtn-(1->3)-[beta-Glc-(1->4)]-alpha-Hep-(1->5)-[alpha-Kdo-(2->4)][beta-L-Ara4N-(1->8)]-alpha-Kdo
 xref: PMID:27469376


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  CHEBI ontology 1274
    chemical entity 1274
      atom 1274
        nonmetal atom 1267
          oxygen atom 1223
            oxygen molecular entity 1223
              organooxygen compound 427
                carbohydrates and carbohydrate derivatives 48
                  glycan 7
                    oligosaccharide derivative 0
                      alpha-D-GalN-(1->4)-[alpha-LD-Hep-(1->2)-alpha-DD-Hep-(1->2)]-alpha-D-GalA-(1->3)-[alpha-LD-Hep-(1->7)]-alpha-LD-Hep6PEtn-(1->3)-[beta-D-Glc-(1->4)]-alpha-LD-Hep-(1->5)-[alpha-Kdo-(2->4)][beta-L-Arap4N-(1->8)]-alpha-Kdo 0
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        hadron 1274
          baryon 1274
            nucleon 1274
              atomic nucleus 1274
                atom 1274
                  main group element atom 1267
                    p-block element atom 1267
                      carbon group element atom 1257
                        carbon atom 1256
                          organic molecular entity 1256
                            heteroorganic entity 477
                              organochalcogen compound 429
                                organooxygen compound 427
                                  carbohydrates and carbohydrate derivatives 48
                                    carbohydrate 48
                                      oligosaccharide 1
                                        oligosaccharide derivative 0
                                          alpha-D-GalN-(1->4)-[alpha-LD-Hep-(1->2)-alpha-DD-Hep-(1->2)]-alpha-D-GalA-(1->3)-[alpha-LD-Hep-(1->7)]-alpha-LD-Hep6PEtn-(1->3)-[beta-D-Glc-(1->4)]-alpha-LD-Hep-(1->5)-[alpha-Kdo-(2->4)][beta-L-Arap4N-(1->8)]-alpha-Kdo 0
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