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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:alpha-D-GalN-(1->4)-[alpha-LD-Hep-(1->2)-alpha-DD-Hep-(1->2)]-alpha-D-GalA-(1->3)-[alpha-LD-Hep-(1->7)]-alpha-LD-Hep6PEtn-(1->3)-[beta-D-Glc-(1->4)]-alpha-LD-Hep-(1->5)-[alpha-Kdo-(2->4)][beta-L-Arap4N-(1->8)]-alpha-Kdo
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Accession:CHEBI:136356 term browser browse the term
Definition:An oligosaccharide derivative that is a undecasaccharide derivative, the oligosaccharide portion of the Proteus penneri strain 13 lipopolysaccharide (LPS) core region. Structural variations can occur: the alpha-LD-Hep substituent linked (1->7) to alpha-LD-Hep6PEtn may be further substituted (1->7) by a beta-D-GalAN residue; if so, then the [alpha-LD-Hep-(1->2)-alpha-DD-Hep branch linked (1->2) to alpha-D-GalA may be absent.
Synonyms:exact_synonym: 4-amino-4-deoxy-beta-L-arabinopyranosyl-(1->8)-[2-amino-2-deoxy-alpha-D-galactopyranosyl-(1->4)-[L-glycero-alpha-D-manno-heptopyranosyl-(1->2)-D-glycero-alpha-D-manno-heptopyranosyl-(1->2)]-alpha-D-galactopyranuronosyl-(1->3)-[L-glycero-alpha-D-manno-heptopyranosyl-(1->7)]-6-O-[(2-aminoethoxy)(hydroxy)phosphoryl]-L-glycero-alpha-D-manno-heptopyranosyl-(1->3)-[beta-D-glucopyranosyl-(1->4)]-L-glycero-alpha-D-manno-heptopyranosyl-(1->5)]-[3-deoxy-alpha-D-manno-oct-2-ulopyranonosyl-(2->4)]-3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid
 related_synonym: Formula=C76H130N3O66P;   InChI=1S/C76H130N3O66P/c77-1-2-126-146(121,122)145-26(14-125-66-41(107)34(100)36(102)48(129-66)17(88)5-80)54-44(110)56(135-72-60(45(111)57(62(141-72)63(114)115)136-64-27(79)32(98)30(96)24(10-85)127-64)139-71-59(39(105)38(104)50(131-71)19(90)7-82)138-68-43(109)35(101)37(103)49(130-68)18(89)6-81)46(112)69(133-54)137-58-47(113)70(132-52(21(92)9-84)61(58)140-67-42(108)33(99)31(97)25(11-86)128-67)134-55-23(142-76(74(118)119)3-16(87)29(95)51(144-76)20(91)8-83)4-75(120,73(116)117)143-53(55)22(93)13-124-65-40(106)28(94)15(78)12-123-65/h15-62,64-72,80-113,120H,1-14,77-79H2,(H,114,115)(H,116,117)(H,118,119)(H,121,122)/t15-,16+,17-,18-,19+,20+,21-,22+,23+,24+,25+,26-,27+,28-,29+,30-,31+,32+,33-,34-,35-,36-,37-,38-,39-,40+,41-,42+,43-,44+,45-,46-,47-,48+,49+,50+,51+,52+,53+,54+,55+,56-,57+,58+,59-,60+,61+,62-,64+,65+,66-,67-,68+,69+,70+,71+,72-,75+,76+/m0/s1;   InChIKey=MXRHIKHPVZCUQI-PUKPJFHPSA-N;   P. Penneri 13 LPS core oligosaccharide;   SMILES=O[C@@H]1[C@H]([C@H](O[C@@H]([C@@H]1O[C@@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O)N)C(O)=O)O[C@@H]3[C@H](O)[C@H](O[C@@]([C@H]3O)([C@@H](OP(=O)(OCCN)O)CO[C@H]4O[C@@]([C@H]([C@@H]([C@@H]4O)O)O)([C@@H](O)CO)[H])[H])O[C@@H]5[C@H](O)[C@H](O[C@@]([C@H]5O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O)O)O)([C@@H](O)CO)[H])O[C@@H]7[C@@H](C[C@@](O[C@@]7([C@H](O)CO[C@@H]8[C@@H]([C@H]([C@H](CO8)N)O)O)[H])(C(=O)O)O)O[C@@]9(C[C@H]([C@H]([C@](O9)([C@H](O)CO)[H])O)O)C(O)=O)O[C@H]%10O[C@@]([C@H]([C@@H]([C@@H]%10O[C@H]%11O[C@@]([C@H]([C@@H]([C@@H]%11O)O)O)([C@@H](O)CO)[H])O)O)([C@H](O)CO)[H];   alpha-D-GalpN-(1->4)-[alpha-LD-Hepp-(1->2)-alpha-DD-Hepp-(1->2)]-alpha-D-GalpA-(1->3)-[alpha-LD-Hepp-(1->7)]-alpha-LD-Hepp6PEtn-(1->3)-[beta-D-Glcp-(1->4)]-alpha-LD-Hepp-(1->5)-[alpha-Kdo-(2->4)][beta-L-Arap4N-(1->8)]-alpha-Kdo;   alpha-GalN-(1->4)-[alpha-Hep-(1->2)-alpha-DD-Hep-(1->2)]-alpha-GalA-(1->3)-[alpha-Hep-(1->7)]-alpha-Hep6PEtn-(1->3)-[beta-Glc-(1->4)]-alpha-Hep-(1->5)-[alpha-Kdo-(2->4)][beta-L-Ara4N-(1->8)]-alpha-Kdo
 xref: PMID:27469376


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  CHEBI ontology 19909
    chemical entity 19907
      atom 19907
        nonmetal atom 19831
          oxygen atom 19572
            oxygen molecular entity 19572
              organooxygen compound 19216
                carbohydrates and carbohydrate derivatives 15321
                  glycan 8423
                    oligosaccharide derivative 160
                      alpha-D-GalN-(1->4)-[alpha-LD-Hep-(1->2)-alpha-DD-Hep-(1->2)]-alpha-D-GalA-(1->3)-[alpha-LD-Hep-(1->7)]-alpha-LD-Hep6PEtn-(1->3)-[beta-D-Glc-(1->4)]-alpha-LD-Hep-(1->5)-[alpha-Kdo-(2->4)][beta-L-Arap4N-(1->8)]-alpha-Kdo 0
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    subatomic particle 19907
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        hadron 19907
          baryon 19907
            nucleon 19907
              atomic nucleus 19907
                atom 19907
                  main group element atom 19846
                    p-block element atom 19846
                      carbon group element atom 19784
                        carbon atom 19781
                          organic molecular entity 19781
                            heteroorganic entity 19540
                              organochalcogen compound 19301
                                organooxygen compound 19216
                                  carbohydrates and carbohydrate derivatives 15321
                                    carbohydrate 15321
                                      oligosaccharide 633
                                        oligosaccharide derivative 160
                                          alpha-D-GalN-(1->4)-[alpha-LD-Hep-(1->2)-alpha-DD-Hep-(1->2)]-alpha-D-GalA-(1->3)-[alpha-LD-Hep-(1->7)]-alpha-LD-Hep6PEtn-(1->3)-[beta-D-Glc-(1->4)]-alpha-LD-Hep-(1->5)-[alpha-Kdo-(2->4)][beta-L-Arap4N-(1->8)]-alpha-Kdo 0
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