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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:8,5'-cyclo-2'-deoxyadenosine
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Accession:CHEBI:131825 term browser browse the term
Definition:An organic heterotetracyclic compound obtained by intramolecular formation of a C-C bond between positions 8 and 5' of 2'-deoxyadenosine.
Synonyms:exact_synonym: (6R,7S,8S,10R)-4-amino-7,8,9,10-tetrahydro-6H-7,10-epoxyazepino[1,2-e]purine-6,8-diol
 related_synonym: 2'-Deoxy-8,5'-cycloadenosine;   8,5'-Cda;   Formula=C10H11N5O3;   InChI=1S/C10H11N5O3/c11-8-5-9(13-2-12-8)15-4-1-3(16)7(18-4)6(17)10(15)14-5/h2-4,6-7,16-17H,1H2,(H2,11,12,13)/t3-,4+,6-,7-/m0/s1;   InChIKey=MBVGIEDXZGVICG-FXZMZVCPSA-N;   SMILES=[C@H]12N3C=4N=CN=C(C4N=C3[C@H]([C@]([C@H](C1)O)(O2)[H])O)N;   cyclo-dA;   cyclodA
 xref: CAS:117182-88-4
 xref_mesh: MESH:C056752
 xref: PMID:22817898;   PMID:23961697;   PMID:24471831;   PMID:25034731;   PMID:25605892;   PMID:26344223;   Reaxys:8118367


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8,5'-cyclo-2'-deoxyadenosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Neil1 nei-like DNA glycosylase 1 affects metabolic processing ISO NEIL1 protein affects the metabolism of 8,5'-cyclo-2'-deoxyadenosine CTD PMID:20067321 NCBI chr 8:57,550,142...57,556,884
Ensembl chr 8:57,550,147...57,556,258 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19898
    role 19868
      application 19714
        NMR chemical shift reference compound 18086
          ammonia 17885
            organic amino compound 17885
              aromatic amine 15498
                8,5'-cyclo-2'-deoxyadenosine 1
Path 2
Term Annotations click to browse term
  CHEBI ontology 19898
    subatomic particle 19896
      composite particle 19896
        hadron 19896
          baryon 19896
            nucleon 19896
              atomic nucleus 19896
                atom 19896
                  main group element atom 19835
                    p-block element atom 19835
                      carbon group element atom 19774
                        carbon atom 19771
                          organic molecular entity 19771
                            heteroorganic entity 19528
                              organochalcogen compound 19290
                                organooxygen compound 19206
                                  carbohydrates and carbohydrate derivatives 15297
                                    carbohydrate 15297
                                      carbohydrate derivative 14310
                                        glycosyl compound 13075
                                          N-glycosyl compound 5876
                                            nucleoside 5734
                                              deoxyribonucleoside 2893
                                                2'-deoxyribonucleoside 2247
                                                  purine 2'-deoxyribonucleoside 34
                                                    purines 2'-deoxy-D-ribonucleoside 14
                                                      2'-deoxyadenosine 8
                                                        8,5'-cyclo-2'-deoxyadenosine 1
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