Resource Links

This page lists some of the genomic and bioinformatics resources that we are aware of which may be of interest to the users of RGD. If you would like a link to your web site added to this page, or if the link to your site needs to be updated, please contact us.

Rat Resources

  • PGA: The Programs for Genomic Applications
  • Ratmap
  • Baylor College of Medicine Rat Resources
  • Rat Genome Sequencing Consortium (RGSC) chromosomal assemblies (ftp site)
  • NCBI: Rat Genome Resources
  • NIAMS: ARB Rat Genetic Database
  • Wellcome Trust Centre: YAC-STS framework for the rat genome
  • MDC: Max Delbruck Center for Molecular Medicine
  • LONI Rat Atlas Image Database
  • UNSW Embryology: Rat Development
  • RRRC: Rat Resource and Research Center
  • National BioResource Project for the Rat in Japan
  • RIKEN BioResource Center:  BAC Clone Distributor
  • RIKEN OmicBrowse Genome Browser
  • Knock Out Rat Consortium (KORC)
  • Genevestigator:  Gene expression data and analysis tool (requires Java)
     

    • Genomic Resources

  • VCMAP Browser
  • GBrowse:  RGD's Rat Genome Browser
  • UCSC Genome Browser
  • Ensembl Browser
  • RIKEN OmicBrowse Genome Browser
  • Ensembl's BioMart Data Mining Tool
  • NCBI MapViewer - Rat
  • ECR Comparative Genome Browser
  • VISTA - Comparative Sequence Alignment Viewer
  • rVISTA - Regulatory Sequence Comparative Sequence Alignment Viewer
  • SoftBerry Sequence Analysis Tools
  • PipMaker - Comparative "Percent Identity Plot" Tool
  • Genevestigator:  Gene expression data and analysis tool (requires Java)
     

    • Mouse Resources

  • MGI:  Mouse Genome Informatics
  • Mouse Phenome Database
  • Mouse Tumor Biology Database
  • RIKEN: FANTOM Functional Annotation of Mouse
     

    • Human Resources

  • Human Genome Sequencing Center
  • NHLBI: National Heart, Lung, and Blood Institute
  • Department of Energy (DOE) Genomics
  • HGPI: Human Genome Project Information
     

    • Yeast Resources

  • Saccharomyces Genome Database
     

    • Bioinformatics Resources

  • EBI: European Bioinformatics Institute
  • The J. Craig Venter Institute (formerly TIGR)
  • IMGS: International Mammalian Genome Society
  • The Whitehead Institute for Biomedical Research at MIT
  • NGRP: National Genetic Resources Program
  • The Wellcome Trust Sanger Institute
  • DDBJ: DNA Data Bank of Japan
  • NHLBI Genetics and Genomics Programs
  • The American Physiological Society
  • The Physiological Society
  • The Genomics Website at Wiley
     

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