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Gene-Chemical Interaction Annotations
Gene-Chemical Interaction AnnotationsTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | 17alpha-ethynylestradiol | decreases expression | ISO | RGD:1311417 | 6480464 | Ethinyl Estradiol results in decreased expression of COL7A1 mRNA | CTD | PMID:17557909 | 17alpha-ethynylestradiol | decreases expression | ISO | | 6480464 | Ethinyl Estradiol results in decreased expression of COL7A1 mRNA | CTD | PMID:17557909 | 2,3,7,8-tetrachlorodibenzodioxine | affects expression | ISO | RGD:1322870 | 6480464 | Tetrachlorodibenzodioxin affects the expression of COL7A1 mRNA | CTD | PMID:21570461 | 2,3,7,8-tetrachlorodibenzodioxine | multiple interactions | ISO | RGD:1322870 | 6480464 | Tetrachlorodibenzodioxin promotes the reaction [tributyltin results in decreased expression of COL7A1 mRNA] | CTD | PMID:22749964 | 3-isobutyl-1-methyl-7H-xanthine | multiple interactions | EXP | | 6480464 | [Dexamethasone co-treated with 8-Bromo Cyclic Adenosine Monophosphate co-treated with 1-Methyl-3-isobutylxanthine] results in decreased expression of COL7A1 mRNA | CTD | PMID:16997883 | 8-bromo-3',5'-cyclic AMP | multiple interactions | EXP | | 6480464 | [Dexamethasone co-treated with 8-Bromo Cyclic Adenosine Monophosphate co-treated with 1-Methyl-3-isobutylxanthine] results in decreased expression of COL7A1 mRNA | CTD | PMID:16997883 | acetylsalicylic acid | decreases expression | EXP | | 6480464 | Aspirin results in decreased expression of COL7A1 mRNA | CTD | PMID:15928584 | aflatoxin B1 | increases expression | EXP | | 6480464 | Aflatoxin B1 results in increased expression of COL7A1 mRNA | CTD | PMID:21641981 | benzo[a]pyrene | decreases expression | EXP | | 6480464 | Benzo(a)pyrene results in decreased expression of COL7A1 mRNA | CTD | PMID:20106945 | benzo[a]pyrene | increases expression | EXP | | 6480464 | Benzo(a)pyrene results in increased expression of COL7A1 mRNA | CTD | PMID:22316170 | C60 fullerene | increases expression | ISO | RGD:1311417 | 6480464 | fullerene C60 results in increased expression of COL7A1 mRNA | CTD | PMID:19167457 | cefaloridine | increases expression | ISO | | 6480464 | Cephaloridine results in increased expression of COL7A1 mRNA | CTD | PMID:18500788 | cefaloridine | increases expression | ISO | RGD:1311417 | 6480464 | Cephaloridine results in increased expression of COL7A1 mRNA | CTD | PMID:18500788 | copper(2+) sulfate | increases expression | EXP | | 6480464 | Copper Sulfate results in increased expression of COL7A1 mRNA | CTD | PMID:19549813 | cortisol | decreases expression | EXP | | 6480464 | Hydrocortisone results in decreased expression of COL7A1 mRNA | CTD | PMID:21267416 | cyclosporin A | decreases expression | EXP | | 6480464 | Cyclosporine results in decreased expression of COL7A1 mRNA | CTD | PMID:20106945 | dexamethasone | multiple interactions | EXP | | 6480464 | [Dexamethasone co-treated with 8-Bromo Cyclic Adenosine Monophosphate co-treated with 1-Methyl-3-isobutylxanthine] results in decreased expression of COL7A1 mRNA | CTD | PMID:16997883 | diarsenic trioxide | decreases expression | EXP | | 6480464 | arsenic trioxide results in decreased expression of COL7A1 mRNA | CTD | PMID:22521957 | diazepam | decreases expression | EXP | | 6480464 | Diazepam results in decreased expression of COL7A1 mRNA | CTD | PMID:19114084 | dimethylarsinic acid | decreases expression | ISO | RGD:1322870 | 6480464 | Cacodylic Acid results in decreased expression of COL7A1 mRNA | CTD | PMID:17441966 | lead diacetate | increases expression | ISO | RGD:1311417 | 6480464 | lead acetate results in increased expression of COL7A1 mRNA | CTD | PMID:11578147 | paclitaxel | increases response to substance | EXP | | 6480464 | COL7A1 protein results in increased susceptibility to Paclitaxel | CTD | PMID:16734730 | paracetamol | increases expression | EXP | | 6480464 | Acetaminophen results in increased expression of COL7A1 mRNA | CTD | PMID:22230336 | progesterone | affects expression | ISO | RGD:1322870 | 6480464 | Progesterone affects the expression of COL7A1 mRNA | CTD | PMID:17251523 | quercetin | increases expression | EXP | | 6480464 | Quercetin results in increased expression of COL7A1 mRNA | CTD | PMID:21632981 | Se-methyl-L-selenocysteine | decreases expression | EXP | | 6480464 | selenomethylselenocysteine results in decreased expression of COL7A1 mRNA | CTD | PMID:18514395 | Se-methylselenocysteine | decreases expression | EXP | | 6480464 | selenomethylselenocysteine results in decreased expression of COL7A1 mRNA | CTD | PMID:18514395 | simvastatin | increases expression | EXP | | 6480464 | Simvastatin results in increased expression of COL7A1 mRNA | CTD | PMID:17428261 | sodium dichromate | increases expression | ISO | RGD:1322870 | 6480464 | sodium bichromate results in increased expression of COL7A1 mRNA | CTD | PMID:22155349 | succimer | multiple interactions | ISO | RGD:1322870 | 6480464 | [Succimer binds to Magnetite Nanoparticles] which results in increased expression of COL7A1 mRNA | CTD | PMID:21641980 | tert-butyl hydroperoxide | increases expression | EXP | | 6480464 | tert-Butylhydroperoxide results in increased expression of COL7A1 mRNA | CTD | PMID:15336504 | tributylstannane | multiple interactions | ISO | RGD:1322870 | 6480464 | Tetrachlorodibenzodioxin promotes the reaction [tributyltin results in decreased expression of COL7A1 mRNA] | CTD | PMID:22749964 | tributylstannane | decreases expression | ISO | RGD:1322870 | 6480464 | tributyltin results in decreased expression of COL7A1 mRNA | CTD | PMID:22749964 | troglitazone | increases expression | EXP | | 6480464 | troglitazone results in increased expression of COL7A1 mRNA | CTD | PMID:19140230 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology Annotations
Molecular Pathway Annotations| External Database Links | |
| KEGG Pathway | Protein digestion and absorption |
| Pathway Interaction Database | Beta1 integrin cell surface interactions (PID:200016) |
| Integrins in angiogenesis (PID:200128) | |
| Syndecan-1-mediated signaling events (PID:200156) | |
Disease Annotations
Gene-Chemical Interaction Annotations
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Gene Ontology Annotations
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Molecular Pathway Annotations
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| External Database Links | |
| KEGG Pathway | Protein digestion and absorption |
| Pathway Interaction Database | Beta1 integrin cell surface interactions (PID:200016) |
| Integrins in angiogenesis (PID:200128) | |
| Syndecan-1-mediated signaling events (PID:200156) | |
References - curated| 1. |
GOA_HUMAN data from the GO Consortium |
| 2. |
Hilal L, etal., Nat Genet. 1993 Nov;5(3):287-93. |
| 3. |
Pipeline to import Pathway Interaction Database annotations from NCI into RGD |
| 4. |
RGD automated import pipeline for gene-chemical interactions |
| 5. |
RGD Automated Pipelines |
References - uncurated| PubMed | 10084325 |
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RGD Disease Portals| COL7A1 has been annotated in the following RGD Disease Portals. |
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Comparative Map Data| COL7A1 (Homo sapiens) |
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| Col7a1 (Mus musculus) |
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| Col7a1 (Rattus norvegicus) |
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Position Markers| RH80100 |
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| GDB:192955 |
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| GDB:192956 |
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| GDB:371386 |
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| GDB:375638 |
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| GDB:375655 |
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| GDB:375661 |
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| GDB:375665 |
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| GDB:375674 |
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| GDB:384983 |
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| GDB:384984 |
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| GDB:384985 |
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| GDB:384986 |
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| RH48881 |
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QTLs in Region (Human Genome Assembly GRCh37)| The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
Nucleotide Sequences| Nucleotide RefSeqs | NG_007065 | (Get FASTA) | Search GEO for Microarray Profiles |
| NM_000094 | (Get FASTA) | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AB209645 | (Get FASTA) | Search GEO for Microarray Profiles |
| ABBA01024643 | (Get FASTA) | Search GEO for Microarray Profiles | |
| ABBA01024644 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AC121252 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AMYH01013151 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BQ300155 | (Get FASTA) | Search GEO for Microarray Profiles | |
| CH471055 | (Get FASTA) | Search GEO for Microarray Profiles | |
| D13694 | (Get FASTA) | Search GEO for Microarray Profiles | |
| L02870 | (Get FASTA) | Search GEO for Microarray Profiles | |
| L06862 | (Get FASTA) | Search GEO for Microarray Profiles | |
| L23982 | (Get FASTA) | Search GEO for Microarray Profiles | |
| M65158 | (Get FASTA) | Search GEO for Microarray Profiles | |
| M96984 | (Get FASTA) | Search GEO for Microarray Profiles | |
| S51236 | (Get FASTA) | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | NM_000094 | |||||||||||||||||||||||||
| RefSeq Status: | REVIEWED | |||||||||||||||||||||||||
| Type: | CODING | |||||||||||||||||||||||||
| Protein Acc Id: | NP_000085 | |||||||||||||||||||||||||
| Peptide Label: | precursor | |||||||||||||||||||||||||
| Position: |
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Protein Sequences| Protein RefSeqs | NP_000085 | (Get FASTA) |
| GenBank Protein | AAA36357 | (Get FASTA) |
| AAA58965 | (Get FASTA) | |
| AAA75438 | (Get FASTA) | |
| AAA89196 | (Get FASTA) | |
| AAA96439 | (Get FASTA) | |
| AAB24637 | (Get FASTA) | |
| BAA02853 | (Get FASTA) | |
| BAD92882 | (Get FASTA) | |
| EAW64893 | (Get FASTA) | |
| EAW64894 | (Get FASTA) | |
| EAW64895 | (Get FASTA) | |
| EAW64896 | (Get FASTA) | |
| EAW64897 | (Get FASTA) | |
| Q02388 | (Get FASTA) |
Promoters| RGD ID: | 6800783 | ||||||||||
| Promoter ID: | HG_KWN:44918 | ||||||||||
| Type: | Non-CpG | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | MPROMDB | ||||||||||
| Tissues & Cell Lines: | NB4 | ||||||||||
| Transcripts: | OTTHUMT00000344975, OTTHUMT00000344976, OTTHUMT00000344977 | ||||||||||
| Position: |
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| RGD ID: | 6800784 | ||||||||||
| Promoter ID: | HG_KWN:44920 | ||||||||||
| Type: | Non-CpG | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | MPROMDB | ||||||||||
| Tissues & Cell Lines: | HeLa_S3 | ||||||||||
| Transcripts: | OTTHUMT00000313514, OTTHUMT00000313515, OTTHUMT00000313516, OTTHUMT00000344978 | ||||||||||
| Position: |
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| RGD ID: | 6800782 | ||||||||||
| Promoter ID: | HG_KWN:44923 | ||||||||||
| Type: | CpG-Island | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | MPROMDB | ||||||||||
| Tissues & Cell Lines: | HeLa_S3, K562, Lymphoblastoid | ||||||||||
| Transcripts: | OTTHUMT00000257519 | ||||||||||
| Position: |
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External Database Links| Database | Acc Id | Source(s) |
| COSMIC | COL7A1 | COSMIC |
| Ensembl Genes | ENSG00000114270 | ENTREZGENE |
| Ensembl Protein | ENSP00000332371 | ENTREZGENE |
| Ensembl Transcript | ENST00000328333 | ENTREZGENE |
| Entrez Gene | 1294 | ENTREZGENE |
| Gene3D-CATH | Ig-like_fold | UniProtKB/Swiss-Prot |
| Prot_inh_Kunz-m | UniProtKB/Swiss-Prot | |
| Germonline | ENSG00000114270 | |
| HGNC ID | 2214 | ENTREZGENE |
| HomoloGene Group ID | 73 | ENTREZGENE |
| HPRD ID | 00358 | ENTREZGENE |
| InterPro | Collagen | UniProtKB/Swiss-Prot |
| Fibronectin_type3 | UniProtKB/Swiss-Prot | |
| Ig-like_fold | UniProtKB/Swiss-Prot | |
| Prot_inh_Kunz-m | UniProtKB/Swiss-Prot | |
| Prtase_inh_Kunz-CS | UniProtKB/Swiss-Prot | |
| VWF_A | UniProtKB/Swiss-Prot | |
| IPI | IPI00025418 | UniProtKB/Swiss-Prot |
| IPI00795118 | UniProtKB/Swiss-Prot | |
| IPI00853500 | UniProtKB/TrEMBL | |
| KEGG Report | hsa:1294 | ENTREZGENE, UniProtKB/Swiss-Prot |
| OMIM | 120120 | OMIM |
| 131705 | OMIM | |
| 131750 | OMIM | |
| 131850 | OMIM | |
| 132000 | OMIM | |
| 226600 | OMIM | |
| 604129 | OMIM | |
| 607523 | OMIM | |
| Pfam | Collagen | UniProtKB/Swiss-Prot |
| fn3 | UniProtKB/Swiss-Prot | |
| Kunitz_BPTI | UniProtKB/Swiss-Prot | |
| VWA | UniProtKB/Swiss-Prot | |
| PharmGKB | PA26730 | PharmGKB |
| PRINTS | BASICPTASE | UniProtKB/Swiss-Prot |
| PROSITE | BPTI_KUNITZ_1 | UniProtKB/Swiss-Prot |
| BPTI_KUNITZ_2 | UniProtKB/Swiss-Prot | |
| FN3 | UniProtKB/Swiss-Prot | |
| VWFA | UniProtKB/Swiss-Prot | |
| SMART | FN3 | UniProtKB/Swiss-Prot |
| VWA | UniProtKB/Swiss-Prot | |
| Superfamily-SCOP | FN_III-like | UniProtKB/Swiss-Prot |
| Prot_inh_Kunz-m | UniProtKB/Swiss-Prot | |
| UniGene | Hs.476218 | ENTREZGENE |
| UniProt | C9JBL3_HUMAN | UniProtKB/TrEMBL |
| CO7A1_HUMAN | UniProtKB/Swiss-Prot | |
| Q59F16_HUMAN | UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2011-08-16 | COL7A1 | collagen, type VII, alpha 1 | COL7A1 | collagen, type VII, alpha 1 | Symbol and/or name change | 39860 | APPROVED |
| More on COL7A1 | |||
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Entrez Gene | ||
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Ensembl Gene | ||
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HGNC Report | ||
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NCBI Map Viewer | ||
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Vista | ||
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Vista + UCSC | ||
| RGD Object Information | |
| RGD ID: | 1322869 |
| Created: | 2005-01-12 |
| Species: | Homo sapiens |
| Last Modified: | 2013-03-05 |
| Status: | ACTIVE |
© Bioinformatics Program, HMGC at the Medical College of Wisconsin
RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.




