RGD Microarray Portal
The RGD Microarray portal is an entry point designed to help researchers access data and tools related to micro-array and expression data.
RGD Rat Gbrowse
The RGD rat Gbrowse tool shows differentially expressed genes from the TIGR PGA data releases. Tracks include multiple strain, tissue, and environmental factor comparisons. To view the tracks click the box next to the experiment description.
For an example output view it.
The output shows the following selected tracks:
- FHH12BN_versus_FHH_Lung_female_Hypoxic
- RGD Genes
- dbSNP SNPs
- Search Landmark or Region: Chr1:83000000..85000000
After all of the options are selected, click the "Search" button.
Microarray Analysis Tools
- GOMiner
GoMiner leverages the Gene Ontology to identify the biological processes, functions and components represented in these lists. Instead of analyzing microarray results with a gene-by-gene approach, GoMiner classifies the genes into biologically coherent categories and assesses these categories. The insights gained through GoMiner can generate hypotheses to guide additional research.
- DAVID and EASE
DAVID and EASE provide integrated solutions for the annotation and analysis of genome-scale datasets derived from high-throughput technologies such as microarray and proteomic platforms.
- Tools for Gene Expression Analysis
- MappFinder
Automatically analyze gene expression/proteomic profiling data in the context of the Gene Ontology hierarchy and GenMAPP biological pathways.
- GenMapp
Visualize gene expression and proteomics data on pre-packaged and custom pathways (MAPPs) with criteria you design.
- Onto-Express, Onto-Compare, Onto-Design, Onto-Translate
OE constructs functional profiles (using Gene Ontology terms) for the following categories: biochemical function, biological process, cellular role, cellular component, molecular function and chromosome location. Statistical significance values are calculated for each category. Additional tools are provided for microarry data storing and analysis.
- Array Track
ArrayTrack is an integrated software system for managing, mining, and visualizing microarray gene expression data. ArrayTrack has three integrated components:- MicroarrayDB stores toxicogenomics data from a microarray experiment.
- TOOL provides data visualization and analysis capability.
- LIB contains functional information about genes, proteins, pathways and toxicants.
- Genevestigator
A tool for the study of expression and regulation of genes, pathways and networks.
Expression Databases
Other GO tools:
