Conflict Report: Single Genes
The chromosome location of genes was compared between the Baylor 3.4 and Celera genome assemblies. 164 genes were assigned to different chromosomes in the two assemblies. 111 of these fell into 6 groups based on sequential location of 5 or more genes. Genes that did not fall into any of these regions are listed here. For additional conflict information see conflict reports for regions on chromosomes 1, 7, 17, and 19, and X.
RGD |
BAYLOR 3.4 |
CELERA |
|||||||||
RGD ID |
GENE SYMBOL |
ACC ID |
CHR |
START |
END |
STRAND |
ACC ID |
CHR |
START |
END |
STRAND |
628702 |
Ppp1r14b |
NM_172045 |
1 |
209648656 |
209650766 |
+ |
NM_172045 |
12 |
17725470 |
17726451 |
+ |
1563903 |
RGD1563903_predicted |
XM_574809 |
2 |
429505 |
430142 |
+ |
XM_001061405 |
12 |
929972 |
938803 |
- |
1561229 |
RGD1561229_predicted |
XM_577973 |
2 |
771502 |
771876 |
+ |
XM_001061341 |
12 |
898711 |
899085 |
- |
620572 |
Faim |
NM_080895 |
2 |
9522802 |
9539268 |
+ |
NM_080895 |
8 |
98949775 |
98965493 |
+ |
735201 |
Cxadrl1 |
NM_199406 |
2 |
9544971 |
9579186 |
- |
NM_199406 |
8 |
98971196 |
99005422 |
- |
2076 |
Ak1 |
NM_024349 |
2 |
19821481 |
19822543 |
+ |
NM_024349 |
3 |
10656922 |
10664141 |
+ |
NM_053976 |
2 |
80043195 |
80044562 |
+ |
XM_001053042 |
7 |
129594038 |
129597714 |
+ |
||
3312 |
Pgam1 |
NM_053290 |
2 |
162840850 |
162842593 |
+ |
NM_053290 |
1 |
236559287 |
236566456 |
+ |
621127 |
Dpp3 |
NM_053748 |
3 |
138286276 |
138288886 |
+ |
NM_053748 |
1 |
199744186 |
199768441 |
- |
621131 |
Uchl3 |
XM_575294 |
3 |
163941218 |
163942121 |
- |
XM_001076488 |
15 |
77676780 |
77718589 |
+ |
XR_005524 |
4 |
24494286 |
24494978 |
- |
XR_007675 |
X |
5833143 |
5833835 |
+ |
||
1560454 |
RGD1560454_predicted |
XM_575496 |
4 |
86170994 |
86172224 |
- |
XM_001080836 |
1 |
91778146 |
91796255 |
- |
XR_006851 |
4 |
100272980 |
100277749 |
+ |
XR_007669 |
3 |
18981756 |
18986525 |
- |
||
XR_006919 |
4 |
102285813 |
102286585 |
- |
XR_007440 |
3 |
17058713 |
17059485 |
+ |
||
XR_006943 |
4 |
102632436 |
102633273 |
- |
XR_007377 |
3 |
16702092 |
16703063 |
+ |
||
XR_006622 |
4 |
134952399 |
134969723 |
- |
XR_008017 |
9 |
82702609 |
82705032 |
+ |
||
621761 |
Sumo2 |
NM_133594 |
5 |
15325450 |
15326429 |
+ |
NM_133594 |
10 |
99346628 |
99359118 |
- |
1562995 |
LOC502940 |
XR_007268 |
5 |
24455700 |
24457363 |
- |
XR_009615 |
17 |
41004976 |
41008853 |
- |
621622 |
Tmsb4x |
NM_031136 |
5 |
59581838 |
59582435 |
- |
NM_031136 |
X |
27555903 |
27557893 |
+ |
621197 |
Marcksl1 |
NM_030862 |
5 |
148669498 |
148672336 |
+ |
NM_030862 |
1 |
79297430 |
79298943 |
+ |
621725 |
Hspa8 |
NM_024351 |
5 |
162476666 |
162478778 |
- |
NM_024351 |
8 |
40782915 |
40786777 |
+ |
1564829 |
LOC364296 |
XR_007269 |
5 |
172637026 |
172637334 |
+ |
XR_009613 |
16 |
1903395 |
1905492 |
- |
1359510 |
LOC298795 |
NM_001013941 |
6 |
23095403 |
23096685 |
- |
XM_001065279 |
X |
59181798 |
59187966 |
- |
727968 |
Ndufa10 |
NM_199495 |
6 |
62280336 |
62282263 |
- |
NM_199495 |
9 |
90544386 |
90579110 |
- |
620221 |
Snap23 |
NM_022689 |
6 |
101650528 |
101650861 |
- |
NM_022689 |
3 |
106435011 |
106450155 |
+ |
621203 |
Rpl32 |
NM_013226 |
6 |
145183237 |
145183707 |
- |
NM_013226 |
4 |
137754088 |
137757652 |
- |
1311538 |
Tbca |
NM_001013245 |
7 |
141657521 |
141663959 |
+ |
NM_001013245 |
2 |
22083635 |
22136708 |
+ |
2293 |
Ccnd3 |
NM_012766 |
8 |
77060065 |
77073605 |
+ |
NM_012766 |
9 |
11145440 |
11151480 |
- |
621477 |
Eif4g2 |
XM_001072139 |
9 |
29441018 |
29451460 |
+ |
XM_001077834 |
1 |
163069814 |
163082142 |
- |
3619 |
Sag |
NM_013023 |
9 |
86759932 |
86799901 |
+ |
NM_013023 |
2 |
54322669 |
54345209 |
- |
1309819 |
Chchd2 |
NM_001015019 |
9 |
93253925 |
93254596 |
- |
XM_001052992 |
12 |
28534998 |
28540869 |
+ |
1564084 |
RGD1564084_predicted |
NM_001025287 |
9 |
112831949 |
112833128 |
- |
NM_001025287 |
8 |
64190174 |
64207799 |
+ |
1564051 |
RGD1564051_predicted |
XM_576632 |
9 |
113233087 |
113234095 |
- |
XM_001053149 |
10 |
106027708 |
106028716 |
- |
1564189 |
Dock2 |
XM_001068649 |
10 |
19207486 |
19660352 |
- |
XM_001063344 |
2 |
140962200 |
140969878 |
- |
1311564 |
RGD1311564_predicted |
XM_346895 |
10 |
75211295 |
75263974 |
- |
XM_001070382 |
15 |
14475591 |
14476646 |
+ |
1304556 |
Actg1 |
XM_001076100 |
10 |
109773484 |
109780937 |
- |
XM_001058533 |
18 |
23378984 |
23380934 |
- |
1307072 |
Ndufb4 |
NM_001037338 |
11 |
64852588 |
64859548 |
+ |
XM_001056198 |
X |
40042297 |
40042786 |
- |
2802 |
Hmgb1 |
XM_001072913 |
12 |
6474239 |
6490367 |
+ |
NM_012963 |
16 |
33957764 |
33959998 |
+ |
2710 |
Glul |
NM_017073 |
12 |
32898168 |
32924845 |
+ |
NM_017073 |
13 |
65918071 |
65930930 |
+ |
1307938 |
Morf4l1 |
NM_001011999 |
13 |
91235624 |
91237344 |
- |
NM_001011999 |
8 |
90186129 |
90207658 |
- |
XM_001052982 |
14 |
77408636 |
77411573 |
+ |
NM_001013236 |
1 |
154890870 |
154915172 |
+ |
||
621374 |
Atp5e |
NM_139099 |
14 |
83615555 |
83615918 |
+ |
NM_139099 |
3 |
162432455 |
162435360 |
- |
1305373 |
Itgb4bp |
NM_001037352 |
14 |
87464742 |
87465776 |
- |
NM_001037352 |
3 |
143049278 |
143055526 |
- |
1311199 |
Peli1 |
XM_001070955 |
14 |
101870112 |
101925872 |
+ |
XM_001060915 |
1 |
69728292 |
69730914 |
- |
2258 |
Calm2 |
NM_017326 |
15 |
64161640 |
64162750 |
- |
NM_017326 |
6 |
6842935 |
6855588 |
+ |
621046 |
Rps28 |
XM_001060434 |
16 |
71191204 |
71191550 |
+ |
XM_001079210 |
7 |
13505206 |
13506561 |
- |
727960 |
Hs1bp1 |
NM_181627 |
17 |
58536807 |
58537888 |
+ |
NM_181627 |
2 |
169373703 |
169377127 |
- |
1560045 |
LOC498826 |
XR_005450 |
20 |
53193355 |
53193670 |
+ |
XR_009609 |
13 |
82801205 |
82801566 |
- |
3322 |
Phb |
XM_001053030 |
X |
36613022 |
36614779 |
- |
XM_001053031 |
10 |
79374762 |
79386570 |
+ |
1359415 |
MGC105830 |
NM_001008370 |
X |
73108020 |
73109851 |
+ |
XM_001052971 |
1 |
199945208 |
199953129 |
- |
NM_001039346 |
X |
76627926 |
76628976 |
+ |
NM_001039346 |
1 |
236580658 |
236592001 |
+ |
||
1562947 |
LOC501617 |
NM_001024366 |
X |
121648062 |
121674376 |
+ |
XM_001078508 |
7 |
113744210 |
113765866 |
+ |


