Conflict Report: Baylor 3.4 chromosome X
The chromosome location of genes was compared between the Baylor 3.4 and Celera genome assemblies. 164 genes were assigned to different chromosomes in the two assemblies. 111 of these fell into 6 groups based on sequential location of 5 or more genes. Two regions on Baylor 3.4 chromosome X were mapped to Celera chromosomes 1 and 3. Four genes did not fall into either of these regions. For additional conflict information see conflict reports for regions on chromosomes 1, 7, 17, and 19. A single gene conflict report is also available.
RGD
|
BAYLOR
3.4
|
CELERA
|
|||||||||
RGD ID
|
GENE SYMBOL
|
ACC ID
|
CHR
|
START
|
END
|
|
ACC ID
|
CHR
|
START
|
END
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1566282
|
RGD1566282_predicted
|
XM_236533
|
X
|
127307832
|
127367166
|
+
|
XM_001054034
|
3
|
44628527
|
44687820
|
-
|
1560247
|
Cldn2_predicted
|
XM_236535
|
X
|
127538843
|
127548190
|
+
|
XM_001054180
|
3
|
44458315
|
44467662
|
-
|
1559905
|
Morc4_predicted
|
XM_236536
|
X
|
127559354
|
127607796
|
-
|
XM_001053814
|
3
|
44398574
|
44447151
|
+
|
|
|
XR_005857
|
X
|
127670789
|
127672231
|
-
|
XR_007316
|
3
|
44334211
|
44335653
|
+
|
1564353
|
RGD1564353_predicted
|
XM_217225
|
X
|
127752321
|
127812949
|
-
|
XM_001053696
|
3
|
44204166
|
44259294
|
+
|
1566312
|
MGC114520
|
NM_001024890
|
X
|
127813183
|
127866223
|
+
|
NM_001024890
|
3
|
44153229
|
44203932
|
-
|
61955
|
Prps1
|
NM_017243
|
X
|
128249845
|
128271890
|
+
|
NM_017243
|
3
|
43777613
|
43799657
|
-
|
621654
|
Tsc22d3
|
NM_031345
|
X
|
128336407
|
128340026
|
-
|
NM_031345
|
3
|
43710348
|
43713972
|
+
|
|
|
XR_005882
|
X
|
128440756
|
128441293
|
+
|
XR_007292
|
3
|
43613371
|
43613908
|
-
|
1565674
|
Mid2_predicted
|
XM_343825
|
X
|
128496180
|
128595523
|
+
|
XM_001053301
|
3
|
43484698
|
43586952
|
-
|
1565570
|
Vsig1
|
NM_001037784
|
X
|
128750375
|
128782153
|
+
|
NM_001037784
|
3
|
43302083
|
43334282
|
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
XR_006663
|
X
|
154748299
|
154749430
|
-
|
XR_007407
|
1
|
134136740
|
134137871
|
+
|
2623
|
Fmr1
|
NM_052804
|
X
|
154756030
|
154793781
|
+
|
NM_052804
|
1
|
134092389
|
134130140
|
-
|
1564059
|
Fmr1nb_predicted
|
XM_215239
|
X
|
154833443
|
154856108
|
+
|
XM_001055042
|
1
|
134039224
|
134062009
|
-
|
1564599
|
RGD1564599_predicted
|
XM_215240
|
X
|
155107285
|
155107958
|
+
|
XM_001054979
|
1
|
133951998
|
133952671
|
+
|
1565592
|
Aff2_predicted
|
XM_219832
|
X
|
155462364
|
155971236
|
+
|
XM_001054673
|
1
|
132969464
|
133469839
|
-
|
1562747
|
RGD1562747_predicted
|
XM_214774
|
X
|
156620139
|
156623654
|
-
|
XM_001054261
|
1
|
132341855
|
132345370
|
-
|
1560491
|
Ids
|
XM_579042
|
X
|
156640129
|
156661030
|
+
|
XM_001054447
|
1
|
132376251
|
132380356
|
+
|
1563037
|
RGD1563037_predicted
|
XM_219837
|
X
|
156926467
|
156951201
|
+
|
XM_001053713
|
1
|
132108405
|
132133135
|
-
|
68320
|
Gabre
|
NM_023091
|
X
|
158335157
|
158353614
|
+
|
NM_023091
|
1
|
131038888
|
131056052
|
-
|
2648
|
Gabra3
|
NM_017069
|
X
|
158405508
|
158633509
|
-
|
NM_017069
|
1
|
131236779
|
131471226
|
-
|
|
|
XR_006746
|
X
|
158659856
|
158661281
|
-
|
XR_007288
|
1
|
131496626
|
131498051
|
-
|
1566078
|
RGD1566078_predicted
|
XM_343837
|
X
|
158765198
|
158765828
|
-
|
XM_001053559
|
1
|
131589349
|
131589979
|
-
|
68331
|
Gabrq
|
NM_031733
|
X
|
158843491
|
158855960
|
+
|
NM_031733
|
1
|
131660366
|
131672835
|
+
|
1562030
|
RGD1562030_predicted
|
XM_219729
|
X
|
158874828
|
158876824
|
+
|
XM_001053679
|
1
|
131691675
|
131693670
|
+
|
620247
|
Cetn2
|
XM_215222
|
X
|
158917610
|
158923209
|
-
|
XM_001053739
|
1
|
131733778
|
131739309
|
-
|
1359337
|
Nsdhl
|
NM_001009399
|
X
|
158923024
|
158954913
|
+
|
NM_001009399
|
1
|
131739124
|
131770245
|
+
|
1565857
|
RGD1565857_predicted
|
XM_219735
|
X
|
159030853
|
159032432
|
-
|
XM_001053900
|
1
|
131845519
|
131847098
|
-
|
1563752
|
Pnma3_predicted
|
XM_219736
|
X
|
159058220
|
159059649
|
+
|
XM_001054018
|
1
|
131870973
|
131872402
|
+
|
1565442
|
RGD1565442_predicted
|
XM_219738
|
X
|
159068517
|
159086030
|
-
|
XM_001054068
|
1
|
131880643
|
131898156
|
-
|
1566014
|
RGD1566014_predicted
|
XM_577058
|
X
|
159089207
|
159090953
|
+
|
XM_001053469
|
1
|
131899600
|
131901346
|
+
|
|
|
XR_006790
|
X
|
159191062
|
159191962
|
-
|
XR_007655
|
1
|
136869412
|
136870267
|
+
|
1564630
|
Zfp275_predicted
|
XM_219713
|
X
|
159237894
|
159254927
|
+
|
XM_001059933
|
1
|
136815214
|
136832031
|
-
|
1559982
|
RGD1559982_predicted
|
XM_219714
|
X
|
159284297
|
159286579
|
-
|
XM_001058237
|
1
|
136783671
|
136785929
|
+
|
|
|
XR_006802
|
X
|
159307919
|
159317591
|
-
|
XR_007641
|
1
|
136752465
|
136762485
|
+
|
1562245
|
Trex2_predicted
|
XM_219746
|
X
|
159334471
|
159336082
|
-
|
XM_001058052
|
1
|
136736127
|
136737738
|
+
|
1562991
|
RGD1562991_predicted
|
XM_215225
|
X
|
159337590
|
159356684
|
-
|
XM_001059802
|
1
|
136715523
|
136734617
|
+
|
2207
|
Bgn
|
NM_017087
|
X
|
159380556
|
159393408
|
+
|
NM_017087
|
1
|
136680177
|
136692375
|
-
|
621304
|
Atp2b3
|
XM_343839
|
X
|
159400429
|
159470682
|
+
|
XM_001057885
|
1
|
136605172
|
136673058
|
-
|
1565183
|
RGD1565183_predicted
|
XM_212890
|
X
|
159509052
|
159509581
|
+
|
XM_001057767
|
1
|
136566275
|
136566804
|
-
|
1565535
|
Dusp9
|
NM_001037973
|
X
|
159538011
|
159541936
|
+
|
NM_001037973
|
1
|
136533932
|
136537857
|
-
|
69249
|
Pnck
|
NM_017275
|
X
|
159555524
|
159559424
|
-
|
NM_017275
|
1
|
136516496
|
136520396
|
+
|
619711
|
Slc6a8
|
NM_017348
|
X
|
159571196
|
159580092
|
+
|
NM_017348
|
1
|
136495565
|
136504461
|
-
|
1302944
|
Bcap31
|
NM_001004224
|
X
|
159583682
|
159614142
|
-
|
NM_001004224
|
1
|
136461515
|
136491975
|
+
|
1562128
|
Abcd1_predicted
|
XM_343840
|
X
|
159614402
|
159636219
|
+
|
XM_001059399
|
1
|
136439439
|
136461255
|
-
|
1560615
|
Plxnb3_predicted
|
XM_343841
|
X
|
159681645
|
159694782
|
+
|
XM_001057493
|
1
|
136380862
|
136393999
|
-
|
727856
|
Srpk3
|
NM_184045
|
X
|
159696739
|
159701301
|
+
|
NM_184045
|
1
|
136374343
|
136378905
|
-
|
2863
|
Idh3g
|
NM_031551
|
X
|
159701344
|
159710253
|
-
|
NM_031551
|
1
|
136365514
|
136374300
|
+
|
62034
|
Ssr4
|
NM_017199
|
X
|
159710429
|
159714301
|
+
|
NM_017199
|
1
|
136361466
|
136365338
|
-
|
1561214
|
Pdzd4_predicted
|
XM_219716
|
X
|
159716488
|
159746837
|
-
|
XM_001057431
|
1
|
136329560
|
136359279
|
+
|
619777
|
L1cam
|
NM_017345
|
X
|
159784791
|
159801552
|
-
|
XM_001053015
|
1
|
136279867
|
136293056
|
+
|
2186
|
Avpr2
|
NM_019136
|
X
|
159821859
|
159823487
|
+
|
NM_019136
|
1
|
136256505
|
136258134
|
-
|
628901
|
Arhgap4
|
NM_144740
|
X
|
159824135
|
159839007
|
-
|
NM_144740
|
1
|
136240985
|
136255857
|
+
|
1565315
|
Ard1_predicted
|
XM_343842
|
X
|
159843947
|
159849143
|
-
|
XM_001057202
|
1
|
136230964
|
136236045
|
+
|
621688
|
Renbp
|
NM_031095
|
X
|
159849354
|
159858287
|
-
|
NM_031095
|
1
|
136221769
|
136230702
|
+
|
1563804
|
Hcfc1_predicted
|
XM_343843
|
X
|
159875670
|
159900535
|
-
|
XM_001057067
|
1
|
136179592
|
136204386
|
+
|
1563841
|
Irak1_predicted
|
XM_343844
|
X
|
159959281
|
159969065
|
-
|
XM_001057078
|
1
|
136116636
|
136126420
|
+
|
3075
|
Mecp2
|
NM_022673
|
X
|
159980588
|
160029650
|
-
|
NM_022673
|
1
|
136055820
|
136105113
|
+
|
620978
|
Opn1mw
|
NM_053548
|
X
|
160095741
|
160115965
|
+
|
NM_053548
|
1
|
135969801
|
135990028
|
-
|
2645
|
G6pdx
|
NM_017006
|
X
|
160186450
|
160192312
|
+
|
NM_017006
|
1
|
135677014
|
135696552
|
+
|
1562076
|
RGD1562076_predicted
|
XM_577060
|
X
|
160218054
|
160226679
|
+
|
XM_001054902
|
1
|
135721316
|
135729941
|
+
|
1563513
|
LOC501665
|
NM_001024368
|
X
|
160234830
|
160238636
|
+
|
NM_001024368
|
1
|
135738092
|
135741898
|
+
|
1563983
|
Ubl4a_predicted
|
XM_215228
|
X
|
160239219
|
160240747
|
+
|
XM_001055202
|
1
|
135742481
|
135744009
|
+
|
1562476
|
RGD1562476_predicted
|
XM_215227
|
X
|
160253160
|
160255164
|
+
|
|||||