Featured RGD Video Tutorials
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The examination of SNPs has undergone a recent change, and in response to this change, RGD has released the new Variant Visualizer tool (VarVis), taking the place of the old SNPlotyper tool. VarVis is a visualization and analysis tool for sequence variation. The data currently contains 22 rat strains sequenced by 4 independent labs.
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The Gene Annotator takes a list of gene symbols, RGD IDs, GenBank accession numbers, Ensembl identifiers, and/or a chromosomal region, and retrieves annotation data from RGD. This tool will retrieve annotations from any or all ontologies used at RGD for genes and their orthologs, as well as links to additional information at other databases.
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Accurate biological nomenclature is an indispensable tool used to create unambiguous annotations for
genetic objects such as genes, QTLs and strains. Learn more about this valuable tool with this video
series.
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| Click here to access RGD's Rat Community Videos page. This page includes all of the tutorial videos that RGD has produced, plus other videos of interest to rat researchers. |
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KEGG Pathway
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Data
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RGD now provides access to over 121,000 pathway annotations from the Kyoto Encyclopedia of Genes and Genomes. Click here for additional information.
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New Gene/Chemical
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Interaction Data
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RGD now has almost 800,000 gene-chemical interaction annotations available from CTD! Click here to learn more.
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Methionine, Homo- cysteine & Folate Metabolic
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Pathway Suite
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RGD releases a suite of new metabolic pathway diagrams. Click here to explore these inter- connected, interdepen- dent pathways.
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Updated p38 MAPK
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Signaling Pathway
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RGD has an updated interactive diagram. Click here to learn about this important stress-activated pathway.
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Immune & Inflammatory
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Disease Portal
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RGD announces the release of the Immune & Inflammatory Disease Portal. Click here to explore genes, QTLs and strains linked to autoimmune diseases, immunoproliferative disorders, infections and more, as well as associated phenotypes, pathways and biological processes.
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RGD's 2013 Calendar
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Available
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If you missed getting a copy of this year's rat calendar, no worries! A high resolution PDF copy is available for download on our FTP site. Click here to get it!
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Calcium Homeostasis
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Pathway Suite
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This newly released RGD suite provides overall views of Ca2+ transport and signaling along with several important individual pathways. Click here to study these inter-related pathways.
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Gene Annotator
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Tutorial
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This tool will retrieve annotations from any or all ontologies used at RGD for genes and their orthologs, as well as links to additional information at other databases.
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Variant Visualizer
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Tutorial
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Taking the place of the old SNPlotyper tool, Variant Visulizer (VarVis) is a visualization and analysis tool for sequence variation. The data currently contains 22 rat strains sequenced by 4 independent labs.
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